miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 63050 0.69 0.953851
Target:  5'- cGCGagGCGACGAucccGGACCUGCUGucgcGCGAg -3'
miRNA:   3'- -CGCa-UGCUGUU----CUUGGACGGCc---UGCU- -5'
15788 5' -52.9 NC_004065.1 + 109839 0.71 0.921143
Target:  5'- uGC-UGCGGCgGGGGGCCaucgcgcaggUGCCGGGCGGu -3'
miRNA:   3'- -CGcAUGCUG-UUCUUGG----------ACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 71823 0.7 0.931634
Target:  5'- -gGUACGACAuacgcGAG-CUGCUGGugGAg -3'
miRNA:   3'- cgCAUGCUGUu----CUUgGACGGCCugCU- -5'
15788 5' -52.9 NC_004065.1 + 60318 0.7 0.936533
Target:  5'- cGCGauagaGCGuCAGGAGCUUGCCGG-CGc -3'
miRNA:   3'- -CGCa----UGCuGUUCUUGGACGGCCuGCu -5'
15788 5' -52.9 NC_004065.1 + 68110 0.7 0.936533
Target:  5'- gGCGgugcaGCGGuuCGAGAGCCugaugggucUGUCGGACGAg -3'
miRNA:   3'- -CGCa----UGCU--GUUCUUGG---------ACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 134874 0.7 0.936533
Target:  5'- gGCGgcgGCGACGAGAACUgucGCuaCGGACu- -3'
miRNA:   3'- -CGCa--UGCUGUUCUUGGa--CG--GCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 77046 0.7 0.936533
Target:  5'- cGCGgaucgGCGACGAGAACacgGCCGaGauccGCGAg -3'
miRNA:   3'- -CGCa----UGCUGUUCUUGga-CGGC-C----UGCU- -5'
15788 5' -52.9 NC_004065.1 + 124952 0.7 0.936533
Target:  5'- cGCGUugcGCGGC-AGcGCCUGCacgaaGGGCGGc -3'
miRNA:   3'- -CGCA---UGCUGuUCuUGGACGg----CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 223808 0.7 0.945644
Target:  5'- -gGUGCGGCAgauAGAAcacgacCCUGUCGGAgGAc -3'
miRNA:   3'- cgCAUGCUGU---UCUU------GGACGGCCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 69133 0.71 0.917816
Target:  5'- cGCGc-CGACAAGGugCUggggaagcugucgacGCUGGACGAg -3'
miRNA:   3'- -CGCauGCUGUUCUugGA---------------CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 140732 0.72 0.897407
Target:  5'- cCGUAUGACGAGAGuuUCUGUCGGAacaGGu -3'
miRNA:   3'- cGCAUGCUGUUCUU--GGACGGCCUg--CU- -5'
15788 5' -52.9 NC_004065.1 + 113367 0.72 0.884193
Target:  5'- cUGUAUGACGAGGACCcucaGGACGAa -3'
miRNA:   3'- cGCAUGCUGUUCUUGGacggCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 142765 0.77 0.623044
Target:  5'- cGCG-ACGACGAcGGCCUGCUGGugGu -3'
miRNA:   3'- -CGCaUGCUGUUcUUGGACGGCCugCu -5'
15788 5' -52.9 NC_004065.1 + 42129 0.75 0.741913
Target:  5'- gGCGcACGACGGGGACaC-GCCGGACa- -3'
miRNA:   3'- -CGCaUGCUGUUCUUG-GaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 136947 0.75 0.751422
Target:  5'- gGCGcuacgACGGCAGGAAaggaCUGCCGGccACGAu -3'
miRNA:   3'- -CGCa----UGCUGUUCUUg---GACGGCC--UGCU- -5'
15788 5' -52.9 NC_004065.1 + 114769 0.75 0.770128
Target:  5'- uGCGaugACGACGAGGAUCUcgaaGCCGG-CGAg -3'
miRNA:   3'- -CGCa--UGCUGUUCUUGGA----CGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 62473 0.74 0.779307
Target:  5'- gGCG-ACGGCAGGAGCg-GCCGcGGCGGu -3'
miRNA:   3'- -CGCaUGCUGUUCUUGgaCGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 139678 0.74 0.796389
Target:  5'- cGCGUucaucGCGACGcggacgaguucgcGGAcgcGCUUGCCGGAUGAg -3'
miRNA:   3'- -CGCA-----UGCUGU-------------UCU---UGGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 61330 0.73 0.823125
Target:  5'- uCG-ACGGCGAGAGCCgcggcgacCCGGGCGAa -3'
miRNA:   3'- cGCaUGCUGUUCUUGGac------GGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 58959 0.72 0.875848
Target:  5'- aGCGUACGACGcaacgcaaCUGCUGGAUGGc -3'
miRNA:   3'- -CGCAUGCUGUucuug---GACGGCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.