miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 129109 1.11 0.007485
Target:  5'- gGCGUACGACAAGAACCUGCCGGACGAu -3'
miRNA:   3'- -CGCAUGCUGUUCUUGGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 203125 0.7 0.931634
Target:  5'- gGCGUGCGGuCGAGcggccucugGACCgGCCGG-CGGu -3'
miRNA:   3'- -CGCAUGCU-GUUC---------UUGGaCGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 111297 0.7 0.936533
Target:  5'- cCG-ACuGCGAG-ACCUGCCGGACa- -3'
miRNA:   3'- cGCaUGcUGUUCuUGGACGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 140805 0.66 0.995358
Target:  5'- --cUACGACGAGAGcgacgugguggacauCCaGCCGGACu- -3'
miRNA:   3'- cgcAUGCUGUUCUU---------------GGaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 129773 0.75 0.764563
Target:  5'- cGCGUcACGAgauguucaaCGAGAACCUGCCcguguucaacuucguGGGCGAc -3'
miRNA:   3'- -CGCA-UGCU---------GUUCUUGGACGG---------------CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 57147 0.75 0.770128
Target:  5'- gGCG-ACGGCAcGGAAUCUGCCgaGGAUGAc -3'
miRNA:   3'- -CGCaUGCUGU-UCUUGGACGG--CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 131471 0.74 0.788358
Target:  5'- --aUACGACGAGGACgaUGCCGcGACGGg -3'
miRNA:   3'- cgcAUGCUGUUCUUGg-ACGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 153243 0.73 0.823125
Target:  5'- aGCGUucgccgucGCGGCGGcGAugC-GCCGGACGAu -3'
miRNA:   3'- -CGCA--------UGCUGUU-CUugGaCGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 103704 0.72 0.870116
Target:  5'- gGUGgGCGGCGGGGagcGCCUGgCGGGCGu -3'
miRNA:   3'- -CGCaUGCUGUUCU---UGGACgGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 139862 0.71 0.926504
Target:  5'- gGCGgagGCGGC-GGAGCCggcgGCaggaCGGACGAg -3'
miRNA:   3'- -CGCa--UGCUGuUCUUGGa---CG----GCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 80461 0.72 0.87726
Target:  5'- uCGUAccCGACGAGcGCgaGUCGGACGAg -3'
miRNA:   3'- cGCAU--GCUGUUCuUGgaCGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 197413 0.73 0.855214
Target:  5'- aUGUACGACGAGcGCCcGCUGGcCGGc -3'
miRNA:   3'- cGCAUGCUGUUCuUGGaCGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 80375 0.75 0.722625
Target:  5'- cGCGcUGCGGCGcgugcAGGGCCUGCC-GACGGc -3'
miRNA:   3'- -CGC-AUGCUGU-----UCUUGGACGGcCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 38473 0.72 0.884193
Target:  5'- cGCGUGCGGaagaguGAGCCgcccuUGCUGGACGu -3'
miRNA:   3'- -CGCAUGCUguu---CUUGG-----ACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 112558 0.75 0.722625
Target:  5'- cCGgugGCGGCGAGcGGCCgcggaGCCGGACGAc -3'
miRNA:   3'- cGCa--UGCUGUUC-UUGGa----CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 97986 0.73 0.854449
Target:  5'- cGUGUACGgguuggaGCAcuacuuccugaAGGACCUGCUGGACa- -3'
miRNA:   3'- -CGCAUGC-------UGU-----------UCUUGGACGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 132197 0.71 0.917816
Target:  5'- aCGUACGuCAAGuuccaccgcguacacAACCUGCCGG-UGAa -3'
miRNA:   3'- cGCAUGCuGUUC---------------UUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 107788 0.7 0.936533
Target:  5'- aGCG-GCGACAGGAacgACCcGCCGGcccgcuCGAg -3'
miRNA:   3'- -CGCaUGCUGUUCU---UGGaCGGCCu-----GCU- -5'
15788 5' -52.9 NC_004065.1 + 121975 0.75 0.751422
Target:  5'- uCGUACaACGAGAGCCgggugUGCCGGcACGAc -3'
miRNA:   3'- cGCAUGcUGUUCUUGG-----ACGGCC-UGCU- -5'
15788 5' -52.9 NC_004065.1 + 31803 0.74 0.788358
Target:  5'- gGC-UACaGGCcgGGGGGCCUGCCGGACGc -3'
miRNA:   3'- -CGcAUG-CUG--UUCUUGGACGGCCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.