miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1579 3' -52.5 NC_001347.2 + 188876 0.66 0.995302
Target:  5'- uGCCAUcCUCACGCcGAcGCCUGuCa-- -3'
miRNA:   3'- -CGGUA-GAGUGCGuUUuCGGGCuGcac -5'
1579 3' -52.5 NC_001347.2 + 210171 0.66 0.995302
Target:  5'- uGCguUCUCAcuCGCGucguGCCUGACGg- -3'
miRNA:   3'- -CGguAGAGU--GCGUuuu-CGGGCUGCac -5'
1579 3' -52.5 NC_001347.2 + 52596 0.66 0.994561
Target:  5'- cGUgcUCUCGCGCGcu-GCCCGACc-- -3'
miRNA:   3'- -CGguAGAGUGCGUuuuCGGGCUGcac -5'
1579 3' -52.5 NC_001347.2 + 128791 0.66 0.994561
Target:  5'- gGCCAUggagcugcaCUCACGCGGccGUCaCGACGc- -3'
miRNA:   3'- -CGGUA---------GAGUGCGUUuuCGG-GCUGCac -5'
1579 3' -52.5 NC_001347.2 + 82748 0.66 0.994482
Target:  5'- gGUCAUcCUCGgacagaagagaguCGCGAAGGCCCG-CGg- -3'
miRNA:   3'- -CGGUA-GAGU-------------GCGUUUUCGGGCuGCac -5'
1579 3' -52.5 NC_001347.2 + 192467 0.66 0.994321
Target:  5'- cGCCucccgCUCacaACGCGugcaacaccugcgcGAGGCCCGGCGc- -3'
miRNA:   3'- -CGGua---GAG---UGCGU--------------UUUCGGGCUGCac -5'
1579 3' -52.5 NC_001347.2 + 68559 0.66 0.993728
Target:  5'- cGCCGUC-CACGCAGuuGaCCaGACGc- -3'
miRNA:   3'- -CGGUAGaGUGCGUUuuC-GGgCUGCac -5'
1579 3' -52.5 NC_001347.2 + 89148 0.66 0.993728
Target:  5'- gGCCA---CACGCAucaccgucAAAGCCUGcuGCGUGg -3'
miRNA:   3'- -CGGUagaGUGCGU--------UUUCGGGC--UGCAC- -5'
1579 3' -52.5 NC_001347.2 + 180469 0.66 0.99364
Target:  5'- aGCuCcgUUCGCGCAGcgcccugGGGCCCuuCGUGg -3'
miRNA:   3'- -CG-GuaGAGUGCGUU-------UUCGGGcuGCAC- -5'
1579 3' -52.5 NC_001347.2 + 89963 0.66 0.992796
Target:  5'- -aCGUCgcaCACGUuguGAugaucuaacAAGCCCGGCGUGu -3'
miRNA:   3'- cgGUAGa--GUGCG---UU---------UUCGGGCUGCAC- -5'
1579 3' -52.5 NC_001347.2 + 224627 0.66 0.992796
Target:  5'- ------aUACGCAGGGGCUgGACGUGg -3'
miRNA:   3'- cgguagaGUGCGUUUUCGGgCUGCAC- -5'
1579 3' -52.5 NC_001347.2 + 196447 0.66 0.992796
Target:  5'- cGCCAcCUCACggccgGCGAcguGGCCCG-CGUc -3'
miRNA:   3'- -CGGUaGAGUG-----CGUUu--UCGGGCuGCAc -5'
1579 3' -52.5 NC_001347.2 + 75470 0.66 0.991757
Target:  5'- cGCCAgCUCACGCAAcaucucCUCGGuCGUGu -3'
miRNA:   3'- -CGGUaGAGUGCGUUuuc---GGGCU-GCAC- -5'
1579 3' -52.5 NC_001347.2 + 85486 0.66 0.991757
Target:  5'- gGCCAgguaCUCGCGCAGcGGUUCGGgCGg- -3'
miRNA:   3'- -CGGUa---GAGUGCGUUuUCGGGCU-GCac -5'
1579 3' -52.5 NC_001347.2 + 178729 0.66 0.991757
Target:  5'- aGCCuUCUCACGC-----CCCGGCGc- -3'
miRNA:   3'- -CGGuAGAGUGCGuuuucGGGCUGCac -5'
1579 3' -52.5 NC_001347.2 + 128976 0.66 0.991757
Target:  5'- aCCAUCUCGCGgAAGAuaCCGuCGg- -3'
miRNA:   3'- cGGUAGAGUGCgUUUUcgGGCuGCac -5'
1579 3' -52.5 NC_001347.2 + 78328 0.66 0.991757
Target:  5'- aCCGUCUacuaccCGCGCGugguccgggcGGaCCCGGCGUGg -3'
miRNA:   3'- cGGUAGA------GUGCGUuu--------UC-GGGCUGCAC- -5'
1579 3' -52.5 NC_001347.2 + 145568 0.67 0.990481
Target:  5'- gGCCGUCUCGgGUgucuucaGGGAGCCgGACc-- -3'
miRNA:   3'- -CGGUAGAGUgCG-------UUUUCGGgCUGcac -5'
1579 3' -52.5 NC_001347.2 + 197748 0.67 0.989325
Target:  5'- gGCCAggUCAucCGCGAGucGGCCUGcuACGUGa -3'
miRNA:   3'- -CGGUagAGU--GCGUUU--UCGGGC--UGCAC- -5'
1579 3' -52.5 NC_001347.2 + 25421 0.67 0.989325
Target:  5'- cGCCuUCUgcUACGCGGc-GCCCgcGACGUGg -3'
miRNA:   3'- -CGGuAGA--GUGCGUUuuCGGG--CUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.