Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15791 | 3' | -56.8 | NC_004065.1 | + | 119521 | 0.68 | 0.875393 |
Target: 5'- aGCCUgUCGACau---CCUUGUCCGGGg -3' miRNA: 3'- -CGGAgAGCUGcgaacGGAGCAGGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 53863 | 0.68 | 0.868363 |
Target: 5'- cGCCaucgUCUCagcagacgGACGCU--CCUCGUCCGAa -3' miRNA: 3'- -CGG----AGAG--------CUGCGAacGGAGCAGGCUc -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 118646 | 0.68 | 0.880874 |
Target: 5'- uCCUcCUCGGCGUcggacgacgacGCCUCGUCCuGGGa -3' miRNA: 3'- cGGA-GAGCUGCGaa---------CGGAGCAGG-CUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 98269 | 0.68 | 0.882223 |
Target: 5'- gGCC-CUgGGCGCgcGCCUCGcggaUCCGGa -3' miRNA: 3'- -CGGaGAgCUGCGaaCGGAGC----AGGCUc -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 211670 | 0.68 | 0.888849 |
Target: 5'- gGCCUCUuuUGA-GCcUGCCUCGcuUUCGAGg -3' miRNA: 3'- -CGGAGA--GCUgCGaACGGAGC--AGGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 206029 | 0.69 | 0.830384 |
Target: 5'- gGCgUCUCGuCGCUcUGUCUCaucgCCGAGg -3' miRNA: 3'- -CGgAGAGCuGCGA-ACGGAGca--GGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 30587 | 0.69 | 0.861137 |
Target: 5'- cGCCg--CGGCGagcGCCUCGUCCGc- -3' miRNA: 3'- -CGGagaGCUGCgaaCGGAGCAGGCuc -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 120583 | 0.7 | 0.788266 |
Target: 5'- aCCUC-CGGCGCcgGUCUCGgCCGGGu -3' miRNA: 3'- cGGAGaGCUGCGaaCGGAGCaGGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 198914 | 0.7 | 0.788266 |
Target: 5'- aGCCUCUCGAuCGCgcGCCg---CCGGGc -3' miRNA: 3'- -CGGAGAGCU-GCGaaCGGagcaGGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 132578 | 0.7 | 0.813986 |
Target: 5'- cCUUCUUGAUGaagugUGCCUCGUCCa-- -3' miRNA: 3'- cGGAGAGCUGCga---ACGGAGCAGGcuc -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 33394 | 0.71 | 0.742917 |
Target: 5'- aGCCUCUCGagGCGCUcGCCccggCGcaUCCGAc -3' miRNA: 3'- -CGGAGAGC--UGCGAaCGGa---GC--AGGCUc -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 81174 | 0.73 | 0.607253 |
Target: 5'- cGCCUcCUCGAuCGCggcggccGCCUCGUggCCGAGc -3' miRNA: 3'- -CGGA-GAGCU-GCGaa-----CGGAGCA--GGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 103117 | 0.75 | 0.548962 |
Target: 5'- gGCCUCcagaUCGACGUg---CUCGUCCGAGg -3' miRNA: 3'- -CGGAG----AGCUGCGaacgGAGCAGGCUC- -5' |
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15791 | 3' | -56.8 | NC_004065.1 | + | 127732 | 0.94 | 0.039195 |
Target: 5'- aGCCUCUCGACGCgu-CCUCGUCCGAGa -3' miRNA: 3'- -CGGAGAGCUGCGaacGGAGCAGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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