miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15791 3' -56.8 NC_004065.1 + 100020 0.67 0.907462
Target:  5'- cGCCggCUCGuCGC-UGCCUCGgggcgguauccUCCGcAGa -3'
miRNA:   3'- -CGGa-GAGCuGCGaACGGAGC-----------AGGC-UC- -5'
15791 3' -56.8 NC_004065.1 + 99664 0.68 0.888849
Target:  5'- aGCCgg-CGGCGCggcGCCgacagCGUCCGGu -3'
miRNA:   3'- -CGGagaGCUGCGaa-CGGa----GCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 99253 0.66 0.93509
Target:  5'- cGCCugcagguUCUCGACGUcgucgucguccuccuCCUCGUCCGAu -3'
miRNA:   3'- -CGG-------AGAGCUGCGaac------------GGAGCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 98269 0.68 0.882223
Target:  5'- gGCC-CUgGGCGCgcGCCUCGcggaUCCGGa -3'
miRNA:   3'- -CGGaGAgCUGCGaaCGGAGC----AGGCUc -5'
15791 3' -56.8 NC_004065.1 + 94472 0.66 0.938813
Target:  5'- cGCCUCccCGuCGUccGCC-CGUCCGAc -3'
miRNA:   3'- -CGGAGa-GCuGCGaaCGGaGCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 91756 0.66 0.947509
Target:  5'- aCCUgUUGACGUccGCCUCGgacacCCGAc -3'
miRNA:   3'- cGGAgAGCUGCGaaCGGAGCa----GGCUc -5'
15791 3' -56.8 NC_004065.1 + 81174 0.73 0.607253
Target:  5'- cGCCUcCUCGAuCGCggcggccGCCUCGUggCCGAGc -3'
miRNA:   3'- -CGGA-GAGCU-GCGaa-----CGGAGCA--GGCUC- -5'
15791 3' -56.8 NC_004065.1 + 64363 0.66 0.934138
Target:  5'- uCCUCUCGGauCGCguccUGCaggCUCuGUCCGAGc -3'
miRNA:   3'- cGGAGAGCU--GCGa---ACG---GAG-CAGGCUC- -5'
15791 3' -56.8 NC_004065.1 + 59656 0.66 0.938813
Target:  5'- aGCCggUCUCGGaGCacGCCaccucguccucgUCGUCCGAGu -3'
miRNA:   3'- -CGG--AGAGCUgCGaaCGG------------AGCAGGCUC- -5'
15791 3' -56.8 NC_004065.1 + 53863 0.68 0.868363
Target:  5'- cGCCaucgUCUCagcagacgGACGCU--CCUCGUCCGAa -3'
miRNA:   3'- -CGG----AGAG--------CUGCGAacGGAGCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 52733 0.67 0.913236
Target:  5'- aCCaCUUGcACGgUgggagaaagUGCCUCGUCCGAGu -3'
miRNA:   3'- cGGaGAGC-UGCgA---------ACGGAGCAGGCUC- -5'
15791 3' -56.8 NC_004065.1 + 33394 0.71 0.742917
Target:  5'- aGCCUCUCGagGCGCUcGCCccggCGcaUCCGAc -3'
miRNA:   3'- -CGGAGAGC--UGCGAaCGGa---GC--AGGCUc -5'
15791 3' -56.8 NC_004065.1 + 30587 0.69 0.861137
Target:  5'- cGCCg--CGGCGagcGCCUCGUCCGc- -3'
miRNA:   3'- -CGGagaGCUGCgaaCGGAGCAGGCuc -5'
15791 3' -56.8 NC_004065.1 + 26196 0.67 0.929242
Target:  5'- cCCUUUCGAC-CUcgaacGCCU-GUCCGAGa -3'
miRNA:   3'- cGGAGAGCUGcGAa----CGGAgCAGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.