miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15791 3' -56.8 NC_004065.1 + 94472 0.66 0.938813
Target:  5'- cGCCUCccCGuCGUccGCC-CGUCCGAc -3'
miRNA:   3'- -CGGAGa-GCuGCGaaCGGaGCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 91756 0.66 0.947509
Target:  5'- aCCUgUUGACGUccGCCUCGgacacCCGAc -3'
miRNA:   3'- cGGAgAGCUGCGaaCGGAGCa----GGCUc -5'
15791 3' -56.8 NC_004065.1 + 212134 0.66 0.951534
Target:  5'- aGUCUCUCGACGg--GCgUCcGUCCGc- -3'
miRNA:   3'- -CGGAGAGCUGCgaaCGgAG-CAGGCuc -5'
15791 3' -56.8 NC_004065.1 + 177793 0.66 0.951534
Target:  5'- cGCCUCUgGgGCGCUUgGUUUCGUagCCGGu -3'
miRNA:   3'- -CGGAGAgC-UGCGAA-CGGAGCA--GGCUc -5'
15791 3' -56.8 NC_004065.1 + 191618 0.66 0.951534
Target:  5'- -gCUCUCGACGUUgauaccgGCCUCGaaaucgCCGc- -3'
miRNA:   3'- cgGAGAGCUGCGAa------CGGAGCa-----GGCuc -5'
15791 3' -56.8 NC_004065.1 + 132433 0.67 0.929242
Target:  5'- gGCCUCcuUCGACGUgUUGCgC-CGUCCGc- -3'
miRNA:   3'- -CGGAG--AGCUGCG-AACG-GaGCAGGCuc -5'
15791 3' -56.8 NC_004065.1 + 100020 0.67 0.907462
Target:  5'- cGCCggCUCGuCGC-UGCCUCGgggcgguauccUCCGcAGa -3'
miRNA:   3'- -CGGa-GAGCuGCGaACGGAGC-----------AGGC-UC- -5'
15791 3' -56.8 NC_004065.1 + 99664 0.68 0.888849
Target:  5'- aGCCgg-CGGCGCggcGCCgacagCGUCCGGu -3'
miRNA:   3'- -CGGagaGCUGCGaa-CGGa----GCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 120016 0.68 0.880874
Target:  5'- cGCCgCUgaGGCGCUUGCCgaagaggcgcagCGUCCaGAGc -3'
miRNA:   3'- -CGGaGAg-CUGCGAACGGa-----------GCAGG-CUC- -5'
15791 3' -56.8 NC_004065.1 + 119521 0.68 0.875393
Target:  5'- aGCCUgUCGACau---CCUUGUCCGGGg -3'
miRNA:   3'- -CGGAgAGCUGcgaacGGAGCAGGCUC- -5'
15791 3' -56.8 NC_004065.1 + 53863 0.68 0.868363
Target:  5'- cGCCaucgUCUCagcagacgGACGCU--CCUCGUCCGAa -3'
miRNA:   3'- -CGG----AGAG--------CUGCGAacGGAGCAGGCUc -5'
15791 3' -56.8 NC_004065.1 + 206029 0.69 0.830384
Target:  5'- gGCgUCUCGuCGCUcUGUCUCaucgCCGAGg -3'
miRNA:   3'- -CGgAGAGCuGCGA-ACGGAGca--GGCUC- -5'
15791 3' -56.8 NC_004065.1 + 127732 0.94 0.039195
Target:  5'- aGCCUCUCGACGCgu-CCUCGUCCGAGa -3'
miRNA:   3'- -CGGAGAGCUGCGaacGGAGCAGGCUC- -5'
15791 3' -56.8 NC_004065.1 + 107661 0.66 0.951534
Target:  5'- aCCUCUCcuccgagguGACGCUgGCCUaCGUgCGGa -3'
miRNA:   3'- cGGAGAG---------CUGCGAaCGGA-GCAgGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.