miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15791 5' -56.1 NC_004065.1 + 19745 0.66 0.960901
Target:  5'- aUCCCaggaaGACGGGGGcGUgcGGGGGUGu -3'
miRNA:   3'- gAGGGg----CUGCUCCU-CGaaCUCCUACu -5'
15791 5' -56.1 NC_004065.1 + 91320 0.66 0.953639
Target:  5'- -gCCCCGcguaGAGGAGCUccuUGAGGccGu -3'
miRNA:   3'- gaGGGGCug--CUCCUCGA---ACUCCuaCu -5'
15791 5' -56.1 NC_004065.1 + 133521 0.66 0.949688
Target:  5'- gUCCuCCGACGAGGAGgaauCUgacgucGAGGAc-- -3'
miRNA:   3'- gAGG-GGCUGCUCCUC----GAa-----CUCCUacu -5'
15791 5' -56.1 NC_004065.1 + 61190 0.66 0.949688
Target:  5'- --aCCCGGCGuAGGccaggacccgcGGCgaGGGGAUGAu -3'
miRNA:   3'- gagGGGCUGC-UCC-----------UCGaaCUCCUACU- -5'
15791 5' -56.1 NC_004065.1 + 75353 0.66 0.945518
Target:  5'- gUCCUCGACggugcccgaGAGGAGCagcugGAGG-UGAu -3'
miRNA:   3'- gAGGGGCUG---------CUCCUCGaa---CUCCuACU- -5'
15791 5' -56.1 NC_004065.1 + 76680 0.67 0.941129
Target:  5'- gUCCCUGACGAucAGCcUGGGGAg-- -3'
miRNA:   3'- gAGGGGCUGCUccUCGaACUCCUacu -5'
15791 5' -56.1 NC_004065.1 + 51068 0.67 0.93168
Target:  5'- -aCCCCGAgGAGuAGauucGAGGAUGAu -3'
miRNA:   3'- gaGGGGCUgCUCcUCgaa-CUCCUACU- -5'
15791 5' -56.1 NC_004065.1 + 112165 0.67 0.926619
Target:  5'- aCUCggaCGGCGGGGAGaagGAGGGUGu -3'
miRNA:   3'- -GAGgg-GCUGCUCCUCgaaCUCCUACu -5'
15791 5' -56.1 NC_004065.1 + 44992 0.67 0.926619
Target:  5'- -cCCCCGGCcgagGAGGAGUaguagGAGGA-GAa -3'
miRNA:   3'- gaGGGGCUG----CUCCUCGaa---CUCCUaCU- -5'
15791 5' -56.1 NC_004065.1 + 18564 0.67 0.921332
Target:  5'- cCUCUCCGGCGAcuccuccgaGGAGCg-GAGGGg-- -3'
miRNA:   3'- -GAGGGGCUGCU---------CCUCGaaCUCCUacu -5'
15791 5' -56.1 NC_004065.1 + 113746 0.67 0.921332
Target:  5'- -aCUCCGGCGAGGAGgccGAGGGa-- -3'
miRNA:   3'- gaGGGGCUGCUCCUCgaaCUCCUacu -5'
15791 5' -56.1 NC_004065.1 + 17989 0.68 0.897952
Target:  5'- cCUCUUgGGuguCGGGGAGCUgGAGGGUGu -3'
miRNA:   3'- -GAGGGgCU---GCUCCUCGAaCUCCUACu -5'
15791 5' -56.1 NC_004065.1 + 139314 0.69 0.85645
Target:  5'- aCUCCaacgaCGGCGAGGAGCgc-AGGAa-- -3'
miRNA:   3'- -GAGGg----GCUGCUCCUCGaacUCCUacu -5'
15791 5' -56.1 NC_004065.1 + 47326 0.7 0.833054
Target:  5'- aUCCgCGGCGGGGGGCaac-GGAUGGc -3'
miRNA:   3'- gAGGgGCUGCUCCUCGaacuCCUACU- -5'
15791 5' -56.1 NC_004065.1 + 115407 0.7 0.799489
Target:  5'- gUCCCCGGCGGGGucguAGC--GAGGgcGAu -3'
miRNA:   3'- gAGGGGCUGCUCC----UCGaaCUCCuaCU- -5'
15791 5' -56.1 NC_004065.1 + 115324 0.7 0.790722
Target:  5'- uCUCCCCuguaGAGGGGCUgcugcUGAGGcgGGc -3'
miRNA:   3'- -GAGGGGcug-CUCCUCGA-----ACUCCuaCU- -5'
15791 5' -56.1 NC_004065.1 + 197734 0.71 0.772793
Target:  5'- -gCUCCGACGAGGAGaccGAGGAc-- -3'
miRNA:   3'- gaGGGGCUGCUCCUCgaaCUCCUacu -5'
15791 5' -56.1 NC_004065.1 + 140486 0.72 0.716438
Target:  5'- -----gGACGAGGAGgaUGAGGAUGAg -3'
miRNA:   3'- gaggggCUGCUCCUCgaACUCCUACU- -5'
15791 5' -56.1 NC_004065.1 + 144873 0.72 0.70676
Target:  5'- uUCCCCGuCuGGGAGCUggaUGAGG-UGAa -3'
miRNA:   3'- gAGGGGCuGcUCCUCGA---ACUCCuACU- -5'
15791 5' -56.1 NC_004065.1 + 61930 0.72 0.697021
Target:  5'- gUCCCUGACGGGGAGCccGGcGAUGc -3'
miRNA:   3'- gAGGGGCUGCUCCUCGaaCUcCUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.