Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15791 | 5' | -56.1 | NC_004065.1 | + | 7298 | 0.73 | 0.627869 |
Target: 5'- gUCCCgGGCGAGGAGCUccUGAcGAUcGAg -3' miRNA: 3'- gAGGGgCUGCUCCUCGA--ACUcCUA-CU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 17989 | 0.68 | 0.897952 |
Target: 5'- cCUCUUgGGuguCGGGGAGCUgGAGGGUGu -3' miRNA: 3'- -GAGGGgCU---GCUCCUCGAaCUCCUACu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 18564 | 0.67 | 0.921332 |
Target: 5'- cCUCUCCGGCGAcuccuccgaGGAGCg-GAGGGg-- -3' miRNA: 3'- -GAGGGGCUGCU---------CCUCGaaCUCCUacu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 19745 | 0.66 | 0.960901 |
Target: 5'- aUCCCaggaaGACGGGGGcGUgcGGGGGUGu -3' miRNA: 3'- gAGGGg----CUGCUCCU-CGaaCUCCUACu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 44992 | 0.67 | 0.926619 |
Target: 5'- -cCCCCGGCcgagGAGGAGUaguagGAGGA-GAa -3' miRNA: 3'- gaGGGGCUG----CUCCUCGaa---CUCCUaCU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 47326 | 0.7 | 0.833054 |
Target: 5'- aUCCgCGGCGGGGGGCaac-GGAUGGc -3' miRNA: 3'- gAGGgGCUGCUCCUCGaacuCCUACU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 51068 | 0.67 | 0.93168 |
Target: 5'- -aCCCCGAgGAGuAGauucGAGGAUGAu -3' miRNA: 3'- gaGGGGCUgCUCcUCgaa-CUCCUACU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 61190 | 0.66 | 0.949688 |
Target: 5'- --aCCCGGCGuAGGccaggacccgcGGCgaGGGGAUGAu -3' miRNA: 3'- gagGGGCUGC-UCC-----------UCGaaCUCCUACU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 61930 | 0.72 | 0.697021 |
Target: 5'- gUCCCUGACGGGGAGCccGGcGAUGc -3' miRNA: 3'- gAGGGGCUGCUCCUCGaaCUcCUACu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 75353 | 0.66 | 0.945518 |
Target: 5'- gUCCUCGACggugcccgaGAGGAGCagcugGAGG-UGAu -3' miRNA: 3'- gAGGGGCUG---------CUCCUCGaa---CUCCuACU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 76680 | 0.67 | 0.941129 |
Target: 5'- gUCCCUGACGAucAGCcUGGGGAg-- -3' miRNA: 3'- gAGGGGCUGCUccUCGaACUCCUacu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 91320 | 0.66 | 0.953639 |
Target: 5'- -gCCCCGcguaGAGGAGCUccuUGAGGccGu -3' miRNA: 3'- gaGGGGCug--CUCCUCGA---ACUCCuaCu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 112165 | 0.67 | 0.926619 |
Target: 5'- aCUCggaCGGCGGGGAGaagGAGGGUGu -3' miRNA: 3'- -GAGgg-GCUGCUCCUCgaaCUCCUACu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 113746 | 0.67 | 0.921332 |
Target: 5'- -aCUCCGGCGAGGAGgccGAGGGa-- -3' miRNA: 3'- gaGGGGCUGCUCCUCgaaCUCCUacu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 115324 | 0.7 | 0.790722 |
Target: 5'- uCUCCCCuguaGAGGGGCUgcugcUGAGGcgGGc -3' miRNA: 3'- -GAGGGGcug-CUCCUCGA-----ACUCCuaCU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 115407 | 0.7 | 0.799489 |
Target: 5'- gUCCCCGGCGGGGucguAGC--GAGGgcGAu -3' miRNA: 3'- gAGGGGCUGCUCC----UCGaaCUCCuaCU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 127765 | 1.09 | 0.004584 |
Target: 5'- aCUCCCCGACGAGGAGCUUGAGGAUGAc -3' miRNA: 3'- -GAGGGGCUGCUCCUCGAACUCCUACU- -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 133521 | 0.66 | 0.949688 |
Target: 5'- gUCCuCCGACGAGGAGgaauCUgacgucGAGGAc-- -3' miRNA: 3'- gAGG-GGCUGCUCCUC----GAa-----CUCCUacu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 139314 | 0.69 | 0.85645 |
Target: 5'- aCUCCaacgaCGGCGAGGAGCgc-AGGAa-- -3' miRNA: 3'- -GAGGg----GCUGCUCCUCGaacUCCUacu -5' |
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15791 | 5' | -56.1 | NC_004065.1 | + | 140486 | 0.72 | 0.716438 |
Target: 5'- -----gGACGAGGAGgaUGAGGAUGAg -3' miRNA: 3'- gaggggCUGCUCCUCgaACUCCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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