miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 212970 0.66 0.999753
Target:  5'- gAGGCGGuaguCCCUguuCucAGCCUGGu -3'
miRNA:   3'- -UUUGCCuuuuGGGGau-GuuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 181566 0.66 0.999753
Target:  5'- -uACGGcaccgucACCuCCUGCA--GCCUGGg -3'
miRNA:   3'- uuUGCCuuu----UGG-GGAUGUuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 176767 0.66 0.999753
Target:  5'- -cGCGGGAGACUCCUcgcgcccCAAGGUUUGa -3'
miRNA:   3'- uuUGCCUUUUGGGGAu------GUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 38949 0.66 0.999728
Target:  5'- aAGACGGGAGACCgaaucaaccuucaCUugGGAGaCCUGa -3'
miRNA:   3'- -UUUGCCUUUUGGg------------GAugUUUC-GGACc -5'
15793 3' -49.1 NC_004065.1 + 46118 0.66 0.999687
Target:  5'- cAAGCGGAAAGCCCCcuaaUACAcucauauGGCauaUGa -3'
miRNA:   3'- -UUUGCCUUUUGGGG----AUGUu------UCGg--ACc -5'
15793 3' -49.1 NC_004065.1 + 95005 0.66 0.999687
Target:  5'- aAAGCGGA--GCCCUUcgcGCAGaAGUCUGa -3'
miRNA:   3'- -UUUGCCUuuUGGGGA---UGUU-UCGGACc -5'
15793 3' -49.1 NC_004065.1 + 129992 0.66 0.999687
Target:  5'- -uGCGGAGGauaccGCCCCgagGCAgcgacGAGCC-GGc -3'
miRNA:   3'- uuUGCCUUU-----UGGGGa--UGU-----UUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 59549 0.66 0.999687
Target:  5'- -cACcGAAGACCCCc-CGAAGCCgaUGGc -3'
miRNA:   3'- uuUGcCUUUUGGGGauGUUUCGG--ACC- -5'
15793 3' -49.1 NC_004065.1 + 177903 0.66 0.999608
Target:  5'- aGAugGGAAgaggauucAACCCgccuguuaugCUGCAGAGCCUc- -3'
miRNA:   3'- -UUugCCUU--------UUGGG----------GAUGUUUCGGAcc -5'
15793 3' -49.1 NC_004065.1 + 91437 0.66 0.999608
Target:  5'- cGAGCGGAcugaaggccuGGACgCCgaaGCGgcGCCUGGc -3'
miRNA:   3'- -UUUGCCU----------UUUGgGGa--UGUuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 38289 0.66 0.999608
Target:  5'- aAAACGGcguaucGACCacgagCUACGuAGCCUGGu -3'
miRNA:   3'- -UUUGCCuu----UUGGg----GAUGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 45874 0.66 0.999608
Target:  5'- cGACGGAggaAGACCCCagacgcgACAcGAGUCUGu -3'
miRNA:   3'- uUUGCCU---UUUGGGGa------UGU-UUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 164884 0.66 0.99951
Target:  5'- cGAGCGGGAcGAUUCCUG---GGUCUGGg -3'
miRNA:   3'- -UUUGCCUU-UUGGGGAUguuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 51514 0.66 0.99951
Target:  5'- cAGCaGcAGGCCCCUAgcaaGAAGCCUGu -3'
miRNA:   3'- uUUGcCuUUUGGGGAUg---UUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 3512 0.66 0.99951
Target:  5'- gAGACGGAGGGgCCUUc----GCCUGGg -3'
miRNA:   3'- -UUUGCCUUUUgGGGAuguuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 76661 0.67 0.999393
Target:  5'- uGAGCaGGAAGCcgcaggcguCCCUgACGAucAGCCUGGg -3'
miRNA:   3'- -UUUGcCUUUUG---------GGGA-UGUU--UCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 127712 0.67 0.999251
Target:  5'- cGACGGAGAACUUCU-CGAgcAGCCUc- -3'
miRNA:   3'- uUUGCCUUUUGGGGAuGUU--UCGGAcc -5'
15793 3' -49.1 NC_004065.1 + 120371 0.67 0.999083
Target:  5'- --cCGGAGGACCCUgcCGGAGUCgcgcaGGa -3'
miRNA:   3'- uuuGCCUUUUGGGGauGUUUCGGa----CC- -5'
15793 3' -49.1 NC_004065.1 + 183799 0.67 0.999083
Target:  5'- -cGCGGuAGAUCCUU-CGGAGCCcGGa -3'
miRNA:   3'- uuUGCCuUUUGGGGAuGUUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 26522 0.67 0.998883
Target:  5'- cGACGGA---CCCCgccgGCAcAGCCaGGa -3'
miRNA:   3'- uUUGCCUuuuGGGGa---UGUuUCGGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.