Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 67285 | 0.71 | 0.978372 |
Target: 5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3' miRNA: 3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 41302 | 0.71 | 0.9759 |
Target: 5'- cAACGGA--GCUCUUGgAGAGCCUGa -3' miRNA: 3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 100040 | 0.71 | 0.978372 |
Target: 5'- gGGGCGGuau-CCUCcGCAGAGCCUGa -3' miRNA: 3'- -UUUGCCuuuuGGGGaUGUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 113739 | 0.71 | 0.984665 |
Target: 5'- --uCGGAGAACUCCggcgAgGAGGCCgagGGa -3' miRNA: 3'- uuuGCCUUUUGGGGa---UgUUUCGGa--CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 51221 | 0.71 | 0.984665 |
Target: 5'- cGGCGGuauGGAUCCCUGCuggauGGCgCUGGc -3' miRNA: 3'- uUUGCCu--UUUGGGGAUGuu---UCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 63927 | 0.72 | 0.960389 |
Target: 5'- cAGGCGGAGgcgcugGGCaUCC-ACGAAGCCUGGa -3' miRNA: 3'- -UUUGCCUU------UUG-GGGaUGUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 176870 | 0.73 | 0.952592 |
Target: 5'- cGGGCGGAcgGCUCCcguCGAGGCuCUGGg -3' miRNA: 3'- -UUUGCCUuuUGGGGau-GUUUCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 112682 | 0.73 | 0.943824 |
Target: 5'- uGACGGcgGACCCCgAC-AAGCCgGGg -3' miRNA: 3'- uUUGCCuuUUGGGGaUGuUUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 46957 | 0.74 | 0.934061 |
Target: 5'- --cCGGGAAACCCUUACAgcGCCa-- -3' miRNA: 3'- uuuGCCUUUUGGGGAUGUuuCGGacc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 207214 | 0.77 | 0.811982 |
Target: 5'- cGAGCGGAAAuguccaaccACCCCcACAGAGCCgcacGGu -3' miRNA: 3'- -UUUGCCUUU---------UGGGGaUGUUUCGGa---CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 129896 | 0.78 | 0.793656 |
Target: 5'- -uGCGGcgGACCCUgauCGGGGCCUGGc -3' miRNA: 3'- uuUGCCuuUUGGGGau-GUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 114589 | 0.79 | 0.74531 |
Target: 5'- cGGCGG-AGugCCCUACGAGGgCUGGu -3' miRNA: 3'- uUUGCCuUUugGGGAUGUUUCgGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 148571 | 0.8 | 0.683942 |
Target: 5'- --cCGGGucAGCCCCgUGCGGGGCCUGGu -3' miRNA: 3'- uuuGCCUu-UUGGGG-AUGUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 196264 | 0.81 | 0.640936 |
Target: 5'- cGAAUGGAGgcccgaggccuccGACUCCUGCAAGGCgCUGGg -3' miRNA: 3'- -UUUGCCUU-------------UUGGGGAUGUUUCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 125946 | 1.08 | 0.020704 |
Target: 5'- cAAACGGAAAACCCCUACAAAGCCUGGc -3' miRNA: 3'- -UUUGCCUUUUGGGGAUGUUUCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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