Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 166229 | 0.69 | 0.996161 |
Target: 5'- uGAUGGAGuucgaccccgagGACCCCUACAAGGUg--- -3' miRNA: 3'- uUUGCCUU------------UUGGGGAUGUUUCGgacc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 42433 | 0.69 | 0.995075 |
Target: 5'- cGGugGGcAAGuACCCCUACGAGGUgaaggacggugaaaaCUGGa -3' miRNA: 3'- -UUugCC-UUU-UGGGGAUGUUUCG---------------GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 30105 | 0.69 | 0.996161 |
Target: 5'- uAGCGaGAGcugcAGCCCCgGC--GGCCUGGg -3' miRNA: 3'- uUUGC-CUU----UUGGGGaUGuuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 110743 | 0.68 | 0.998369 |
Target: 5'- uGGCGGAcguCCCCUucugGCGccGCCUGa -3' miRNA: 3'- uUUGCCUuuuGGGGA----UGUuuCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 144603 | 0.68 | 0.998045 |
Target: 5'- uAGCGGAugguCCCCUGC--AGCUUcGGg -3' miRNA: 3'- uUUGCCUuuu-GGGGAUGuuUCGGA-CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 67186 | 0.68 | 0.998045 |
Target: 5'- uGACGGAccACCCgUACc--GUCUGGg -3' miRNA: 3'- uUUGCCUuuUGGGgAUGuuuCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 89991 | 0.68 | 0.998369 |
Target: 5'- cGACGGGagcGAACCCg-ACGGAGCCg-- -3' miRNA: 3'- uUUGCCU---UUUGGGgaUGUUUCGGacc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 188547 | 0.68 | 0.997669 |
Target: 5'- cGAUGGuuGAACCCCaGCucGAGCCcGGa -3' miRNA: 3'- uUUGCCu-UUUGGGGaUGu-UUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 186231 | 0.68 | 0.997669 |
Target: 5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3' miRNA: 3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 31357 | 0.68 | 0.997234 |
Target: 5'- --cCGGAAAAUCCgCgggACGGAGUCUGa -3' miRNA: 3'- uuuGCCUUUUGGG-Ga--UGUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 208854 | 0.68 | 0.997234 |
Target: 5'- uAAUGGAGAGCCgUUGCGGAuccucGCCgGGg -3' miRNA: 3'- uUUGCCUUUUGGgGAUGUUU-----CGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 142243 | 0.68 | 0.997234 |
Target: 5'- -cAUGGAGAugCUgCUGCAGGGCUUGu -3' miRNA: 3'- uuUGCCUUUugGG-GAUGUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 26522 | 0.67 | 0.998883 |
Target: 5'- cGACGGA---CCCCgccgGCAcAGCCaGGa -3' miRNA: 3'- uUUGCCUuuuGGGGa---UGUuUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 202214 | 0.67 | 0.998646 |
Target: 5'- --cCGGggGguACCCgacACAGAGCUUGGu -3' miRNA: 3'- uuuGCCuuU--UGGGga-UGUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 225794 | 0.67 | 0.998646 |
Target: 5'- gAAACGcaGAGggUCCCcGCGgcccAGGCCUGGu -3' miRNA: 3'- -UUUGC--CUUuuGGGGaUGU----UUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 76661 | 0.67 | 0.999393 |
Target: 5'- uGAGCaGGAAGCcgcaggcguCCCUgACGAucAGCCUGGg -3' miRNA: 3'- -UUUGcCUUUUG---------GGGA-UGUU--UCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 127712 | 0.67 | 0.999251 |
Target: 5'- cGACGGAGAACUUCU-CGAgcAGCCUc- -3' miRNA: 3'- uUUGCCUUUUGGGGAuGUU--UCGGAcc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 183799 | 0.67 | 0.999083 |
Target: 5'- -cGCGGuAGAUCCUU-CGGAGCCcGGa -3' miRNA: 3'- uuUGCCuUUUGGGGAuGUUUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 120371 | 0.67 | 0.999083 |
Target: 5'- --cCGGAGGACCCUgcCGGAGUCgcgcaGGa -3' miRNA: 3'- uuuGCCUUUUGGGGauGUUUCGGa----CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 166316 | 0.67 | 0.998883 |
Target: 5'- -uGCGGAGGACUCCUAUcAGGuCCgugucuagGGa -3' miRNA: 3'- uuUGCCUUUUGGGGAUGuUUC-GGa-------CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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