miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 125946 1.08 0.020704
Target:  5'- cAAACGGAAAACCCCUACAAAGCCUGGc -3'
miRNA:   3'- -UUUGCCUUUUGGGGAUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 196264 0.81 0.640936
Target:  5'- cGAAUGGAGgcccgaggccuccGACUCCUGCAAGGCgCUGGg -3'
miRNA:   3'- -UUUGCCUU-------------UUGGGGAUGUUUCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 148571 0.8 0.683942
Target:  5'- --cCGGGucAGCCCCgUGCGGGGCCUGGu -3'
miRNA:   3'- uuuGCCUu-UUGGGG-AUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 114589 0.79 0.74531
Target:  5'- cGGCGG-AGugCCCUACGAGGgCUGGu -3'
miRNA:   3'- uUUGCCuUUugGGGAUGUUUCgGACC- -5'
15793 3' -49.1 NC_004065.1 + 129896 0.78 0.793656
Target:  5'- -uGCGGcgGACCCUgauCGGGGCCUGGc -3'
miRNA:   3'- uuUGCCuuUUGGGGau-GUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 207214 0.77 0.811982
Target:  5'- cGAGCGGAAAuguccaaccACCCCcACAGAGCCgcacGGu -3'
miRNA:   3'- -UUUGCCUUU---------UGGGGaUGUUUCGGa---CC- -5'
15793 3' -49.1 NC_004065.1 + 46957 0.74 0.934061
Target:  5'- --cCGGGAAACCCUUACAgcGCCa-- -3'
miRNA:   3'- uuuGCCUUUUGGGGAUGUuuCGGacc -5'
15793 3' -49.1 NC_004065.1 + 112682 0.73 0.943824
Target:  5'- uGACGGcgGACCCCgAC-AAGCCgGGg -3'
miRNA:   3'- uUUGCCuuUUGGGGaUGuUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 176870 0.73 0.952592
Target:  5'- cGGGCGGAcgGCUCCcguCGAGGCuCUGGg -3'
miRNA:   3'- -UUUGCCUuuUGGGGau-GUUUCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 63927 0.72 0.960389
Target:  5'- cAGGCGGAGgcgcugGGCaUCC-ACGAAGCCUGGa -3'
miRNA:   3'- -UUUGCCUU------UUG-GGGaUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 41302 0.71 0.9759
Target:  5'- cAACGGA--GCUCUUGgAGAGCCUGa -3'
miRNA:   3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 67285 0.71 0.978372
Target:  5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3'
miRNA:   3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5'
15793 3' -49.1 NC_004065.1 + 100040 0.71 0.978372
Target:  5'- gGGGCGGuau-CCUCcGCAGAGCCUGa -3'
miRNA:   3'- -UUUGCCuuuuGGGGaUGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 51221 0.71 0.984665
Target:  5'- cGGCGGuauGGAUCCCUGCuggauGGCgCUGGc -3'
miRNA:   3'- uUUGCCu--UUUGGGGAUGuu---UCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 113739 0.71 0.984665
Target:  5'- --uCGGAGAACUCCggcgAgGAGGCCgagGGa -3'
miRNA:   3'- uuuGCCUUUUGGGGa---UgUUUCGGa--CC- -5'
15793 3' -49.1 NC_004065.1 + 61421 0.7 0.986249
Target:  5'- cGACGGucgaguaGAGGCCCCUACccAGGGCC-GGc -3'
miRNA:   3'- uUUGCC-------UUUUGGGGAUG--UUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 151074 0.7 0.986417
Target:  5'- -cAUGuuGGAUCCCUGCGcGGGCCUGGu -3'
miRNA:   3'- uuUGCcuUUUGGGGAUGU-UUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 129147 0.69 0.992991
Target:  5'- cGGCGGAggaGAACUaCCUgggGCGcAGCCUGGa -3'
miRNA:   3'- uUUGCCU---UUUGG-GGA---UGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 135532 0.69 0.993842
Target:  5'- cGAACGGAGAuaACCgCCUGaucucuuCAAAGCCacagGGa -3'
miRNA:   3'- -UUUGCCUUU--UGG-GGAU-------GUUUCGGa---CC- -5'
15793 3' -49.1 NC_004065.1 + 204111 0.69 0.993932
Target:  5'- cGGCGG-GAACCUgcGCAuGGCCUGGc -3'
miRNA:   3'- uUUGCCuUUUGGGgaUGUuUCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.