Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 51514 | 0.66 | 0.99951 |
Target: 5'- cAGCaGcAGGCCCCUAgcaaGAAGCCUGu -3' miRNA: 3'- uUUGcCuUUUGGGGAUg---UUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 3512 | 0.66 | 0.99951 |
Target: 5'- gAGACGGAGGGgCCUUc----GCCUGGg -3' miRNA: 3'- -UUUGCCUUUUgGGGAuguuuCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 164884 | 0.66 | 0.99951 |
Target: 5'- cGAGCGGGAcGAUUCCUG---GGUCUGGg -3' miRNA: 3'- -UUUGCCUU-UUGGGGAUguuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 177903 | 0.66 | 0.999608 |
Target: 5'- aGAugGGAAgaggauucAACCCgccuguuaugCUGCAGAGCCUc- -3' miRNA: 3'- -UUugCCUU--------UUGGG----------GAUGUUUCGGAcc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 38289 | 0.66 | 0.999608 |
Target: 5'- aAAACGGcguaucGACCacgagCUACGuAGCCUGGu -3' miRNA: 3'- -UUUGCCuu----UUGGg----GAUGUuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 45874 | 0.66 | 0.999608 |
Target: 5'- cGACGGAggaAGACCCCagacgcgACAcGAGUCUGu -3' miRNA: 3'- uUUGCCU---UUUGGGGa------UGU-UUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 91437 | 0.66 | 0.999608 |
Target: 5'- cGAGCGGAcugaaggccuGGACgCCgaaGCGgcGCCUGGc -3' miRNA: 3'- -UUUGCCU----------UUUGgGGa--UGUuuCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 46118 | 0.66 | 0.999687 |
Target: 5'- cAAGCGGAAAGCCCCcuaaUACAcucauauGGCauaUGa -3' miRNA: 3'- -UUUGCCUUUUGGGG----AUGUu------UCGg--ACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 95005 | 0.66 | 0.999687 |
Target: 5'- aAAGCGGA--GCCCUUcgcGCAGaAGUCUGa -3' miRNA: 3'- -UUUGCCUuuUGGGGA---UGUU-UCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 129992 | 0.66 | 0.999687 |
Target: 5'- -uGCGGAGGauaccGCCCCgagGCAgcgacGAGCC-GGc -3' miRNA: 3'- uuUGCCUUU-----UGGGGa--UGU-----UUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 59549 | 0.66 | 0.999687 |
Target: 5'- -cACcGAAGACCCCc-CGAAGCCgaUGGc -3' miRNA: 3'- uuUGcCUUUUGGGGauGUUUCGG--ACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 38949 | 0.66 | 0.999728 |
Target: 5'- aAGACGGGAGACCgaaucaaccuucaCUugGGAGaCCUGa -3' miRNA: 3'- -UUUGCCUUUUGGg------------GAugUUUC-GGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 176767 | 0.66 | 0.999753 |
Target: 5'- -cGCGGGAGACUCCUcgcgcccCAAGGUUUGa -3' miRNA: 3'- uuUGCCUUUUGGGGAu------GUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 212970 | 0.66 | 0.999753 |
Target: 5'- gAGGCGGuaguCCCUguuCucAGCCUGGu -3' miRNA: 3'- -UUUGCCuuuuGGGGau-GuuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 181566 | 0.66 | 0.999753 |
Target: 5'- -uACGGcaccgucACCuCCUGCA--GCCUGGg -3' miRNA: 3'- uuUGCCuuu----UGG-GGAUGUuuCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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