miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 3512 0.66 0.99951
Target:  5'- gAGACGGAGGGgCCUUc----GCCUGGg -3'
miRNA:   3'- -UUUGCCUUUUgGGGAuguuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 26522 0.67 0.998883
Target:  5'- cGACGGA---CCCCgccgGCAcAGCCaGGa -3'
miRNA:   3'- uUUGCCUuuuGGGGa---UGUuUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 30105 0.69 0.996161
Target:  5'- uAGCGaGAGcugcAGCCCCgGC--GGCCUGGg -3'
miRNA:   3'- uUUGC-CUU----UUGGGGaUGuuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 31357 0.68 0.997234
Target:  5'- --cCGGAAAAUCCgCgggACGGAGUCUGa -3'
miRNA:   3'- uuuGCCUUUUGGG-Ga--UGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 38289 0.66 0.999608
Target:  5'- aAAACGGcguaucGACCacgagCUACGuAGCCUGGu -3'
miRNA:   3'- -UUUGCCuu----UUGGg----GAUGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 38949 0.66 0.999728
Target:  5'- aAGACGGGAGACCgaaucaaccuucaCUugGGAGaCCUGa -3'
miRNA:   3'- -UUUGCCUUUUGGg------------GAugUUUC-GGACc -5'
15793 3' -49.1 NC_004065.1 + 41302 0.71 0.9759
Target:  5'- cAACGGA--GCUCUUGgAGAGCCUGa -3'
miRNA:   3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 42433 0.69 0.995075
Target:  5'- cGGugGGcAAGuACCCCUACGAGGUgaaggacggugaaaaCUGGa -3'
miRNA:   3'- -UUugCC-UUU-UGGGGAUGUUUCG---------------GACC- -5'
15793 3' -49.1 NC_004065.1 + 45874 0.66 0.999608
Target:  5'- cGACGGAggaAGACCCCagacgcgACAcGAGUCUGu -3'
miRNA:   3'- uUUGCCU---UUUGGGGa------UGU-UUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 46118 0.66 0.999687
Target:  5'- cAAGCGGAAAGCCCCcuaaUACAcucauauGGCauaUGa -3'
miRNA:   3'- -UUUGCCUUUUGGGG----AUGUu------UCGg--ACc -5'
15793 3' -49.1 NC_004065.1 + 46957 0.74 0.934061
Target:  5'- --cCGGGAAACCCUUACAgcGCCa-- -3'
miRNA:   3'- uuuGCCUUUUGGGGAUGUuuCGGacc -5'
15793 3' -49.1 NC_004065.1 + 51221 0.71 0.984665
Target:  5'- cGGCGGuauGGAUCCCUGCuggauGGCgCUGGc -3'
miRNA:   3'- uUUGCCu--UUUGGGGAUGuu---UCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 51514 0.66 0.99951
Target:  5'- cAGCaGcAGGCCCCUAgcaaGAAGCCUGu -3'
miRNA:   3'- uUUGcCuUUUGGGGAUg---UUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 59549 0.66 0.999687
Target:  5'- -cACcGAAGACCCCc-CGAAGCCgaUGGc -3'
miRNA:   3'- uuUGcCUUUUGGGGauGUUUCGG--ACC- -5'
15793 3' -49.1 NC_004065.1 + 61421 0.7 0.986249
Target:  5'- cGACGGucgaguaGAGGCCCCUACccAGGGCC-GGc -3'
miRNA:   3'- uUUGCC-------UUUUGGGGAUG--UUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 63927 0.72 0.960389
Target:  5'- cAGGCGGAGgcgcugGGCaUCC-ACGAAGCCUGGa -3'
miRNA:   3'- -UUUGCCUU------UUG-GGGaUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 67186 0.68 0.998045
Target:  5'- uGACGGAccACCCgUACc--GUCUGGg -3'
miRNA:   3'- uUUGCCUuuUGGGgAUGuuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 67285 0.71 0.978372
Target:  5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3'
miRNA:   3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5'
15793 3' -49.1 NC_004065.1 + 76661 0.67 0.999393
Target:  5'- uGAGCaGGAAGCcgcaggcguCCCUgACGAucAGCCUGGg -3'
miRNA:   3'- -UUUGcCUUUUG---------GGGA-UGUU--UCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 89991 0.68 0.998369
Target:  5'- cGACGGGagcGAACCCg-ACGGAGCCg-- -3'
miRNA:   3'- uUUGCCU---UUUGGGgaUGUUUCGGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.