Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 166316 | 0.67 | 0.998883 |
Target: 5'- -uGCGGAGGACUCCUAUcAGGuCCgugucuagGGa -3' miRNA: 3'- uuUGCCUUUUGGGGAUGuUUC-GGa-------CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 176767 | 0.66 | 0.999753 |
Target: 5'- -cGCGGGAGACUCCUcgcgcccCAAGGUUUGa -3' miRNA: 3'- uuUGCCUUUUGGGGAu------GUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 176870 | 0.73 | 0.952592 |
Target: 5'- cGGGCGGAcgGCUCCcguCGAGGCuCUGGg -3' miRNA: 3'- -UUUGCCUuuUGGGGau-GUUUCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 177903 | 0.66 | 0.999608 |
Target: 5'- aGAugGGAAgaggauucAACCCgccuguuaugCUGCAGAGCCUc- -3' miRNA: 3'- -UUugCCUU--------UUGGG----------GAUGUUUCGGAcc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 181566 | 0.66 | 0.999753 |
Target: 5'- -uACGGcaccgucACCuCCUGCA--GCCUGGg -3' miRNA: 3'- uuUGCCuuu----UGG-GGAUGUuuCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 183799 | 0.67 | 0.999083 |
Target: 5'- -cGCGGuAGAUCCUU-CGGAGCCcGGa -3' miRNA: 3'- uuUGCCuUUUGGGGAuGUUUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 186231 | 0.68 | 0.997669 |
Target: 5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3' miRNA: 3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 188547 | 0.68 | 0.997669 |
Target: 5'- cGAUGGuuGAACCCCaGCucGAGCCcGGa -3' miRNA: 3'- uUUGCCu-UUUGGGGaUGu-UUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 196264 | 0.81 | 0.640936 |
Target: 5'- cGAAUGGAGgcccgaggccuccGACUCCUGCAAGGCgCUGGg -3' miRNA: 3'- -UUUGCCUU-------------UUGGGGAUGUUUCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 202214 | 0.67 | 0.998646 |
Target: 5'- --cCGGggGguACCCgacACAGAGCUUGGu -3' miRNA: 3'- uuuGCCuuU--UGGGga-UGUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 204111 | 0.69 | 0.993932 |
Target: 5'- cGGCGG-GAACCUgcGCAuGGCCUGGc -3' miRNA: 3'- uUUGCCuUUUGGGgaUGUuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 207214 | 0.77 | 0.811982 |
Target: 5'- cGAGCGGAAAuguccaaccACCCCcACAGAGCCgcacGGu -3' miRNA: 3'- -UUUGCCUUU---------UGGGGaUGUUUCGGa---CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 208854 | 0.68 | 0.997234 |
Target: 5'- uAAUGGAGAGCCgUUGCGGAuccucGCCgGGg -3' miRNA: 3'- uUUGCCUUUUGGgGAUGUUU-----CGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 212970 | 0.66 | 0.999753 |
Target: 5'- gAGGCGGuaguCCCUguuCucAGCCUGGu -3' miRNA: 3'- -UUUGCCuuuuGGGGau-GuuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 225794 | 0.67 | 0.998646 |
Target: 5'- gAAACGcaGAGggUCCCcGCGgcccAGGCCUGGu -3' miRNA: 3'- -UUUGC--CUUuuGGGGaUGU----UUCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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