miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 225794 0.67 0.998646
Target:  5'- gAAACGcaGAGggUCCCcGCGgcccAGGCCUGGu -3'
miRNA:   3'- -UUUGC--CUUuuGGGGaUGU----UUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 212970 0.66 0.999753
Target:  5'- gAGGCGGuaguCCCUguuCucAGCCUGGu -3'
miRNA:   3'- -UUUGCCuuuuGGGGau-GuuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 208854 0.68 0.997234
Target:  5'- uAAUGGAGAGCCgUUGCGGAuccucGCCgGGg -3'
miRNA:   3'- uUUGCCUUUUGGgGAUGUUU-----CGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 207214 0.77 0.811982
Target:  5'- cGAGCGGAAAuguccaaccACCCCcACAGAGCCgcacGGu -3'
miRNA:   3'- -UUUGCCUUU---------UGGGGaUGUUUCGGa---CC- -5'
15793 3' -49.1 NC_004065.1 + 204111 0.69 0.993932
Target:  5'- cGGCGG-GAACCUgcGCAuGGCCUGGc -3'
miRNA:   3'- uUUGCCuUUUGGGgaUGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 202214 0.67 0.998646
Target:  5'- --cCGGggGguACCCgacACAGAGCUUGGu -3'
miRNA:   3'- uuuGCCuuU--UGGGga-UGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 196264 0.81 0.640936
Target:  5'- cGAAUGGAGgcccgaggccuccGACUCCUGCAAGGCgCUGGg -3'
miRNA:   3'- -UUUGCCUU-------------UUGGGGAUGUUUCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 188547 0.68 0.997669
Target:  5'- cGAUGGuuGAACCCCaGCucGAGCCcGGa -3'
miRNA:   3'- uUUGCCu-UUUGGGGaUGu-UUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 186231 0.68 0.997669
Target:  5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3'
miRNA:   3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 183799 0.67 0.999083
Target:  5'- -cGCGGuAGAUCCUU-CGGAGCCcGGa -3'
miRNA:   3'- uuUGCCuUUUGGGGAuGUUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 181566 0.66 0.999753
Target:  5'- -uACGGcaccgucACCuCCUGCA--GCCUGGg -3'
miRNA:   3'- uuUGCCuuu----UGG-GGAUGUuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 177903 0.66 0.999608
Target:  5'- aGAugGGAAgaggauucAACCCgccuguuaugCUGCAGAGCCUc- -3'
miRNA:   3'- -UUugCCUU--------UUGGG----------GAUGUUUCGGAcc -5'
15793 3' -49.1 NC_004065.1 + 176870 0.73 0.952592
Target:  5'- cGGGCGGAcgGCUCCcguCGAGGCuCUGGg -3'
miRNA:   3'- -UUUGCCUuuUGGGGau-GUUUCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 176767 0.66 0.999753
Target:  5'- -cGCGGGAGACUCCUcgcgcccCAAGGUUUGa -3'
miRNA:   3'- uuUGCCUUUUGGGGAu------GUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 166316 0.67 0.998883
Target:  5'- -uGCGGAGGACUCCUAUcAGGuCCgugucuagGGa -3'
miRNA:   3'- uuUGCCUUUUGGGGAUGuUUC-GGa-------CC- -5'
15793 3' -49.1 NC_004065.1 + 166229 0.69 0.996161
Target:  5'- uGAUGGAGuucgaccccgagGACCCCUACAAGGUg--- -3'
miRNA:   3'- uUUGCCUU------------UUGGGGAUGUUUCGgacc -5'
15793 3' -49.1 NC_004065.1 + 164884 0.66 0.99951
Target:  5'- cGAGCGGGAcGAUUCCUG---GGUCUGGg -3'
miRNA:   3'- -UUUGCCUU-UUGGGGAUguuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 151074 0.7 0.986417
Target:  5'- -cAUGuuGGAUCCCUGCGcGGGCCUGGu -3'
miRNA:   3'- uuUGCcuUUUGGGGAUGU-UUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 148571 0.8 0.683942
Target:  5'- --cCGGGucAGCCCCgUGCGGGGCCUGGu -3'
miRNA:   3'- uuuGCCUu-UUGGGG-AUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 144603 0.68 0.998045
Target:  5'- uAGCGGAugguCCCCUGC--AGCUUcGGg -3'
miRNA:   3'- uUUGCCUuuu-GGGGAUGuuUCGGA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.