miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 142243 0.68 0.997234
Target:  5'- -cAUGGAGAugCUgCUGCAGGGCUUGu -3'
miRNA:   3'- uuUGCCUUUugGG-GAUGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 135532 0.69 0.993842
Target:  5'- cGAACGGAGAuaACCgCCUGaucucuuCAAAGCCacagGGa -3'
miRNA:   3'- -UUUGCCUUU--UGG-GGAU-------GUUUCGGa---CC- -5'
15793 3' -49.1 NC_004065.1 + 129992 0.66 0.999687
Target:  5'- -uGCGGAGGauaccGCCCCgagGCAgcgacGAGCC-GGc -3'
miRNA:   3'- uuUGCCUUU-----UGGGGa--UGU-----UUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 129896 0.78 0.793656
Target:  5'- -uGCGGcgGACCCUgauCGGGGCCUGGc -3'
miRNA:   3'- uuUGCCuuUUGGGGau-GUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 129147 0.69 0.992991
Target:  5'- cGGCGGAggaGAACUaCCUgggGCGcAGCCUGGa -3'
miRNA:   3'- uUUGCCU---UUUGG-GGA---UGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 127712 0.67 0.999251
Target:  5'- cGACGGAGAACUUCU-CGAgcAGCCUc- -3'
miRNA:   3'- uUUGCCUUUUGGGGAuGUU--UCGGAcc -5'
15793 3' -49.1 NC_004065.1 + 125946 1.08 0.020704
Target:  5'- cAAACGGAAAACCCCUACAAAGCCUGGc -3'
miRNA:   3'- -UUUGCCUUUUGGGGAUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 120371 0.67 0.999083
Target:  5'- --cCGGAGGACCCUgcCGGAGUCgcgcaGGa -3'
miRNA:   3'- uuuGCCUUUUGGGGauGUUUCGGa----CC- -5'
15793 3' -49.1 NC_004065.1 + 114589 0.79 0.74531
Target:  5'- cGGCGG-AGugCCCUACGAGGgCUGGu -3'
miRNA:   3'- uUUGCCuUUugGGGAUGUUUCgGACC- -5'
15793 3' -49.1 NC_004065.1 + 113739 0.71 0.984665
Target:  5'- --uCGGAGAACUCCggcgAgGAGGCCgagGGa -3'
miRNA:   3'- uuuGCCUUUUGGGGa---UgUUUCGGa--CC- -5'
15793 3' -49.1 NC_004065.1 + 112682 0.73 0.943824
Target:  5'- uGACGGcgGACCCCgAC-AAGCCgGGg -3'
miRNA:   3'- uUUGCCuuUUGGGGaUGuUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 110743 0.68 0.998369
Target:  5'- uGGCGGAcguCCCCUucugGCGccGCCUGa -3'
miRNA:   3'- uUUGCCUuuuGGGGA----UGUuuCGGACc -5'
15793 3' -49.1 NC_004065.1 + 100040 0.71 0.978372
Target:  5'- gGGGCGGuau-CCUCcGCAGAGCCUGa -3'
miRNA:   3'- -UUUGCCuuuuGGGGaUGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 95005 0.66 0.999687
Target:  5'- aAAGCGGA--GCCCUUcgcGCAGaAGUCUGa -3'
miRNA:   3'- -UUUGCCUuuUGGGGA---UGUU-UCGGACc -5'
15793 3' -49.1 NC_004065.1 + 91437 0.66 0.999608
Target:  5'- cGAGCGGAcugaaggccuGGACgCCgaaGCGgcGCCUGGc -3'
miRNA:   3'- -UUUGCCU----------UUUGgGGa--UGUuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 89991 0.68 0.998369
Target:  5'- cGACGGGagcGAACCCg-ACGGAGCCg-- -3'
miRNA:   3'- uUUGCCU---UUUGGGgaUGUUUCGGacc -5'
15793 3' -49.1 NC_004065.1 + 76661 0.67 0.999393
Target:  5'- uGAGCaGGAAGCcgcaggcguCCCUgACGAucAGCCUGGg -3'
miRNA:   3'- -UUUGcCUUUUG---------GGGA-UGUU--UCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 67285 0.71 0.978372
Target:  5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3'
miRNA:   3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5'
15793 3' -49.1 NC_004065.1 + 67186 0.68 0.998045
Target:  5'- uGACGGAccACCCgUACc--GUCUGGg -3'
miRNA:   3'- uUUGCCUuuUGGGgAUGuuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 63927 0.72 0.960389
Target:  5'- cAGGCGGAGgcgcugGGCaUCC-ACGAAGCCUGGa -3'
miRNA:   3'- -UUUGCCUU------UUG-GGGaUGUUUCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.