Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 61421 | 0.7 | 0.986249 |
Target: 5'- cGACGGucgaguaGAGGCCCCUACccAGGGCC-GGc -3' miRNA: 3'- uUUGCC-------UUUUGGGGAUG--UUUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 59549 | 0.66 | 0.999687 |
Target: 5'- -cACcGAAGACCCCc-CGAAGCCgaUGGc -3' miRNA: 3'- uuUGcCUUUUGGGGauGUUUCGG--ACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 51514 | 0.66 | 0.99951 |
Target: 5'- cAGCaGcAGGCCCCUAgcaaGAAGCCUGu -3' miRNA: 3'- uUUGcCuUUUGGGGAUg---UUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 51221 | 0.71 | 0.984665 |
Target: 5'- cGGCGGuauGGAUCCCUGCuggauGGCgCUGGc -3' miRNA: 3'- uUUGCCu--UUUGGGGAUGuu---UCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 46957 | 0.74 | 0.934061 |
Target: 5'- --cCGGGAAACCCUUACAgcGCCa-- -3' miRNA: 3'- uuuGCCUUUUGGGGAUGUuuCGGacc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 46118 | 0.66 | 0.999687 |
Target: 5'- cAAGCGGAAAGCCCCcuaaUACAcucauauGGCauaUGa -3' miRNA: 3'- -UUUGCCUUUUGGGG----AUGUu------UCGg--ACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 45874 | 0.66 | 0.999608 |
Target: 5'- cGACGGAggaAGACCCCagacgcgACAcGAGUCUGu -3' miRNA: 3'- uUUGCCU---UUUGGGGa------UGU-UUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 42433 | 0.69 | 0.995075 |
Target: 5'- cGGugGGcAAGuACCCCUACGAGGUgaaggacggugaaaaCUGGa -3' miRNA: 3'- -UUugCC-UUU-UGGGGAUGUUUCG---------------GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 41302 | 0.71 | 0.9759 |
Target: 5'- cAACGGA--GCUCUUGgAGAGCCUGa -3' miRNA: 3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 38949 | 0.66 | 0.999728 |
Target: 5'- aAGACGGGAGACCgaaucaaccuucaCUugGGAGaCCUGa -3' miRNA: 3'- -UUUGCCUUUUGGg------------GAugUUUC-GGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 38289 | 0.66 | 0.999608 |
Target: 5'- aAAACGGcguaucGACCacgagCUACGuAGCCUGGu -3' miRNA: 3'- -UUUGCCuu----UUGGg----GAUGUuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 31357 | 0.68 | 0.997234 |
Target: 5'- --cCGGAAAAUCCgCgggACGGAGUCUGa -3' miRNA: 3'- uuuGCCUUUUGGG-Ga--UGUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 30105 | 0.69 | 0.996161 |
Target: 5'- uAGCGaGAGcugcAGCCCCgGC--GGCCUGGg -3' miRNA: 3'- uUUGC-CUU----UUGGGGaUGuuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 26522 | 0.67 | 0.998883 |
Target: 5'- cGACGGA---CCCCgccgGCAcAGCCaGGa -3' miRNA: 3'- uUUGCCUuuuGGGGa---UGUuUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 3512 | 0.66 | 0.99951 |
Target: 5'- gAGACGGAGGGgCCUUc----GCCUGGg -3' miRNA: 3'- -UUUGCCUUUUgGGGAuguuuCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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