miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 166316 0.67 0.998883
Target:  5'- -uGCGGAGGACUCCUAUcAGGuCCgugucuagGGa -3'
miRNA:   3'- uuUGCCUUUUGGGGAUGuUUC-GGa-------CC- -5'
15793 3' -49.1 NC_004065.1 + 31357 0.68 0.997234
Target:  5'- --cCGGAAAAUCCgCgggACGGAGUCUGa -3'
miRNA:   3'- uuuGCCUUUUGGG-Ga--UGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 186231 0.68 0.997669
Target:  5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3'
miRNA:   3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 188547 0.68 0.997669
Target:  5'- cGAUGGuuGAACCCCaGCucGAGCCcGGa -3'
miRNA:   3'- uUUGCCu-UUUGGGGaUGu-UUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 67186 0.68 0.998045
Target:  5'- uGACGGAccACCCgUACc--GUCUGGg -3'
miRNA:   3'- uUUGCCUuuUGGGgAUGuuuCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 144603 0.68 0.998045
Target:  5'- uAGCGGAugguCCCCUGC--AGCUUcGGg -3'
miRNA:   3'- uUUGCCUuuu-GGGGAUGuuUCGGA-CC- -5'
15793 3' -49.1 NC_004065.1 + 110743 0.68 0.998369
Target:  5'- uGGCGGAcguCCCCUucugGCGccGCCUGa -3'
miRNA:   3'- uUUGCCUuuuGGGGA----UGUuuCGGACc -5'
15793 3' -49.1 NC_004065.1 + 202214 0.67 0.998646
Target:  5'- --cCGGggGguACCCgacACAGAGCUUGGu -3'
miRNA:   3'- uuuGCCuuU--UGGGga-UGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 225794 0.67 0.998646
Target:  5'- gAAACGcaGAGggUCCCcGCGgcccAGGCCUGGu -3'
miRNA:   3'- -UUUGC--CUUuuGGGGaUGU----UUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 30105 0.69 0.996161
Target:  5'- uAGCGaGAGcugcAGCCCCgGC--GGCCUGGg -3'
miRNA:   3'- uUUGC-CUU----UUGGGGaUGuuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 151074 0.7 0.986417
Target:  5'- -cAUGuuGGAUCCCUGCGcGGGCCUGGu -3'
miRNA:   3'- uuUGCcuUUUGGGGAUGU-UUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 61421 0.7 0.986249
Target:  5'- cGACGGucgaguaGAGGCCCCUACccAGGGCC-GGc -3'
miRNA:   3'- uUUGCC-------UUUUGGGGAUG--UUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 114589 0.79 0.74531
Target:  5'- cGGCGG-AGugCCCUACGAGGgCUGGu -3'
miRNA:   3'- uUUGCCuUUugGGGAUGUUUCgGACC- -5'
15793 3' -49.1 NC_004065.1 + 207214 0.77 0.811982
Target:  5'- cGAGCGGAAAuguccaaccACCCCcACAGAGCCgcacGGu -3'
miRNA:   3'- -UUUGCCUUU---------UGGGGaUGUUUCGGa---CC- -5'
15793 3' -49.1 NC_004065.1 + 46957 0.74 0.934061
Target:  5'- --cCGGGAAACCCUUACAgcGCCa-- -3'
miRNA:   3'- uuuGCCUUUUGGGGAUGUuuCGGacc -5'
15793 3' -49.1 NC_004065.1 + 176870 0.73 0.952592
Target:  5'- cGGGCGGAcgGCUCCcguCGAGGCuCUGGg -3'
miRNA:   3'- -UUUGCCUuuUGGGGau-GUUUCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 41302 0.71 0.9759
Target:  5'- cAACGGA--GCUCUUGgAGAGCCUGa -3'
miRNA:   3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 67285 0.71 0.978372
Target:  5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3'
miRNA:   3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5'
15793 3' -49.1 NC_004065.1 + 113739 0.71 0.984665
Target:  5'- --uCGGAGAACUCCggcgAgGAGGCCgagGGa -3'
miRNA:   3'- uuuGCCUUUUGGGGa---UgUUUCGGa--CC- -5'
15793 3' -49.1 NC_004065.1 + 51221 0.71 0.984665
Target:  5'- cGGCGGuauGGAUCCCUGCuggauGGCgCUGGc -3'
miRNA:   3'- uUUGCCu--UUUGGGGAUGuu---UCG-GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.