Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 46957 | 0.74 | 0.934061 |
Target: 5'- --cCGGGAAACCCUUACAgcGCCa-- -3' miRNA: 3'- uuuGCCUUUUGGGGAUGUuuCGGacc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 176870 | 0.73 | 0.952592 |
Target: 5'- cGGGCGGAcgGCUCCcguCGAGGCuCUGGg -3' miRNA: 3'- -UUUGCCUuuUGGGGau-GUUUCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 41302 | 0.71 | 0.9759 |
Target: 5'- cAACGGA--GCUCUUGgAGAGCCUGa -3' miRNA: 3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 67285 | 0.71 | 0.978372 |
Target: 5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3' miRNA: 3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 113739 | 0.71 | 0.984665 |
Target: 5'- --uCGGAGAACUCCggcgAgGAGGCCgagGGa -3' miRNA: 3'- uuuGCCUUUUGGGGa---UgUUUCGGa--CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 186231 | 0.68 | 0.997669 |
Target: 5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3' miRNA: 3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 31357 | 0.68 | 0.997234 |
Target: 5'- --cCGGAAAAUCCgCgggACGGAGUCUGa -3' miRNA: 3'- uuuGCCUUUUGGG-Ga--UGUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 30105 | 0.69 | 0.996161 |
Target: 5'- uAGCGaGAGcugcAGCCCCgGC--GGCCUGGg -3' miRNA: 3'- uUUGC-CUU----UUGGGGaUGuuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 151074 | 0.7 | 0.986417 |
Target: 5'- -cAUGuuGGAUCCCUGCGcGGGCCUGGu -3' miRNA: 3'- uuUGCcuUUUGGGGAUGU-UUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 61421 | 0.7 | 0.986249 |
Target: 5'- cGACGGucgaguaGAGGCCCCUACccAGGGCC-GGc -3' miRNA: 3'- uUUGCC-------UUUUGGGGAUG--UUUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 51221 | 0.71 | 0.984665 |
Target: 5'- cGGCGGuauGGAUCCCUGCuggauGGCgCUGGc -3' miRNA: 3'- uUUGCCu--UUUGGGGAUGuu---UCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 204111 | 0.69 | 0.993932 |
Target: 5'- cGGCGG-GAACCUgcGCAuGGCCUGGc -3' miRNA: 3'- uUUGCCuUUUGGGgaUGUuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 135532 | 0.69 | 0.993842 |
Target: 5'- cGAACGGAGAuaACCgCCUGaucucuuCAAAGCCacagGGa -3' miRNA: 3'- -UUUGCCUUU--UGG-GGAU-------GUUUCGGa---CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 129147 | 0.69 | 0.992991 |
Target: 5'- cGGCGGAggaGAACUaCCUgggGCGcAGCCUGGa -3' miRNA: 3'- uUUGCCU---UUUGG-GGA---UGUuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 100040 | 0.71 | 0.978372 |
Target: 5'- gGGGCGGuau-CCUCcGCAGAGCCUGa -3' miRNA: 3'- -UUUGCCuuuuGGGGaUGUUUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 63927 | 0.72 | 0.960389 |
Target: 5'- cAGGCGGAGgcgcugGGCaUCC-ACGAAGCCUGGa -3' miRNA: 3'- -UUUGCCUU------UUG-GGGaUGUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 112682 | 0.73 | 0.943824 |
Target: 5'- uGACGGcgGACCCCgAC-AAGCCgGGg -3' miRNA: 3'- uUUGCCuuUUGGGGaUGuUUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 129896 | 0.78 | 0.793656 |
Target: 5'- -uGCGGcgGACCCUgauCGGGGCCUGGc -3' miRNA: 3'- uuUGCCuuUUGGGGau-GUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 196264 | 0.81 | 0.640936 |
Target: 5'- cGAAUGGAGgcccgaggccuccGACUCCUGCAAGGCgCUGGg -3' miRNA: 3'- -UUUGCCUU-------------UUGGGGAUGUUUCG-GACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 181566 | 0.66 | 0.999753 |
Target: 5'- -uACGGcaccgucACCuCCUGCA--GCCUGGg -3' miRNA: 3'- uuUGCCuuu----UGG-GGAUGUuuCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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