miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 3' -49.1 NC_004065.1 + 95005 0.66 0.999687
Target:  5'- aAAGCGGA--GCCCUUcgcGCAGaAGUCUGa -3'
miRNA:   3'- -UUUGCCUuuUGGGGA---UGUU-UCGGACc -5'
15793 3' -49.1 NC_004065.1 + 208854 0.68 0.997234
Target:  5'- uAAUGGAGAGCCgUUGCGGAuccucGCCgGGg -3'
miRNA:   3'- uUUGCCUUUUGGgGAUGUUU-----CGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 142243 0.68 0.997234
Target:  5'- -cAUGGAGAugCUgCUGCAGGGCUUGu -3'
miRNA:   3'- uuUGCCUUUugGG-GAUGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 166229 0.69 0.996161
Target:  5'- uGAUGGAGuucgaccccgagGACCCCUACAAGGUg--- -3'
miRNA:   3'- uUUGCCUU------------UUGGGGAUGUUUCGgacc -5'
15793 3' -49.1 NC_004065.1 + 125946 1.08 0.020704
Target:  5'- cAAACGGAAAACCCCUACAAAGCCUGGc -3'
miRNA:   3'- -UUUGCCUUUUGGGGAUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 196264 0.81 0.640936
Target:  5'- cGAAUGGAGgcccgaggccuccGACUCCUGCAAGGCgCUGGg -3'
miRNA:   3'- -UUUGCCUU-------------UUGGGGAUGUUUCG-GACC- -5'
15793 3' -49.1 NC_004065.1 + 129896 0.78 0.793656
Target:  5'- -uGCGGcgGACCCUgauCGGGGCCUGGc -3'
miRNA:   3'- uuUGCCuuUUGGGGau-GUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 112682 0.73 0.943824
Target:  5'- uGACGGcgGACCCCgAC-AAGCCgGGg -3'
miRNA:   3'- uUUGCCuuUUGGGGaUGuUUCGGaCC- -5'
15793 3' -49.1 NC_004065.1 + 63927 0.72 0.960389
Target:  5'- cAGGCGGAGgcgcugGGCaUCC-ACGAAGCCUGGa -3'
miRNA:   3'- -UUUGCCUU------UUG-GGGaUGUUUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 100040 0.71 0.978372
Target:  5'- gGGGCGGuau-CCUCcGCAGAGCCUGa -3'
miRNA:   3'- -UUUGCCuuuuGGGGaUGUUUCGGACc -5'
15793 3' -49.1 NC_004065.1 + 129147 0.69 0.992991
Target:  5'- cGGCGGAggaGAACUaCCUgggGCGcAGCCUGGa -3'
miRNA:   3'- uUUGCCU---UUUGG-GGA---UGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 135532 0.69 0.993842
Target:  5'- cGAACGGAGAuaACCgCCUGaucucuuCAAAGCCacagGGa -3'
miRNA:   3'- -UUUGCCUUU--UGG-GGAU-------GUUUCGGa---CC- -5'
15793 3' -49.1 NC_004065.1 + 204111 0.69 0.993932
Target:  5'- cGGCGG-GAACCUgcGCAuGGCCUGGc -3'
miRNA:   3'- uUUGCCuUUUGGGgaUGUuUCGGACC- -5'
15793 3' -49.1 NC_004065.1 + 42433 0.69 0.995075
Target:  5'- cGGugGGcAAGuACCCCUACGAGGUgaaggacggugaaaaCUGGa -3'
miRNA:   3'- -UUugCC-UUU-UGGGGAUGUUUCG---------------GACC- -5'
15793 3' -49.1 NC_004065.1 + 181566 0.66 0.999753
Target:  5'- -uACGGcaccgucACCuCCUGCA--GCCUGGg -3'
miRNA:   3'- uuUGCCuuu----UGG-GGAUGUuuCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.