Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 208854 | 0.68 | 0.997234 |
Target: 5'- uAAUGGAGAGCCgUUGCGGAuccucGCCgGGg -3' miRNA: 3'- uUUGCCUUUUGGgGAUGUUU-----CGGaCC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 51514 | 0.66 | 0.99951 |
Target: 5'- cAGCaGcAGGCCCCUAgcaaGAAGCCUGu -3' miRNA: 3'- uUUGcCuUUUGGGGAUg---UUUCGGACc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 127712 | 0.67 | 0.999251 |
Target: 5'- cGACGGAGAACUUCU-CGAgcAGCCUc- -3' miRNA: 3'- uUUGCCUUUUGGGGAuGUU--UCGGAcc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 89991 | 0.68 | 0.998369 |
Target: 5'- cGACGGGagcGAACCCg-ACGGAGCCg-- -3' miRNA: 3'- uUUGCCU---UUUGGGgaUGUUUCGGacc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 67285 | 0.71 | 0.978372 |
Target: 5'- cGGCGGAGAcgcaggACCUggggggCUACAAGuGCCUGGg -3' miRNA: 3'- uUUGCCUUU------UGGG------GAUGUUU-CGGACC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 188547 | 0.68 | 0.997669 |
Target: 5'- cGAUGGuuGAACCCCaGCucGAGCCcGGa -3' miRNA: 3'- uUUGCCu-UUUGGGGaUGu-UUCGGaCC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 207214 | 0.77 | 0.811982 |
Target: 5'- cGAGCGGAAAuguccaaccACCCCcACAGAGCCgcacGGu -3' miRNA: 3'- -UUUGCCUUU---------UGGGGaUGUUUCGGa---CC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 176767 | 0.66 | 0.999753 |
Target: 5'- -cGCGGGAGACUCCUcgcgcccCAAGGUUUGa -3' miRNA: 3'- uuUGCCUUUUGGGGAu------GUUUCGGACc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 38949 | 0.66 | 0.999728 |
Target: 5'- aAGACGGGAGACCgaaucaaccuucaCUugGGAGaCCUGa -3' miRNA: 3'- -UUUGCCUUUUGGg------------GAugUUUC-GGACc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 129992 | 0.66 | 0.999687 |
Target: 5'- -uGCGGAGGauaccGCCCCgagGCAgcgacGAGCC-GGc -3' miRNA: 3'- uuUGCCUUU-----UGGGGa--UGU-----UUCGGaCC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 186231 | 0.68 | 0.997669 |
Target: 5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3' miRNA: 3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 31357 | 0.68 | 0.997234 |
Target: 5'- --cCGGAAAAUCCgCgggACGGAGUCUGa -3' miRNA: 3'- uuuGCCUUUUGGG-Ga--UGUUUCGGACc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 30105 | 0.69 | 0.996161 |
Target: 5'- uAGCGaGAGcugcAGCCCCgGC--GGCCUGGg -3' miRNA: 3'- uUUGC-CUU----UUGGGGaUGuuUCGGACC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 41302 | 0.71 | 0.9759 |
Target: 5'- cAACGGA--GCUCUUGgAGAGCCUGa -3' miRNA: 3'- uUUGCCUuuUGGGGAUgUUUCGGACc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 26522 | 0.67 | 0.998883 |
Target: 5'- cGACGGA---CCCCgccgGCAcAGCCaGGa -3' miRNA: 3'- uUUGCCUuuuGGGGa---UGUuUCGGaCC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 45874 | 0.66 | 0.999608 |
Target: 5'- cGACGGAggaAGACCCCagacgcgACAcGAGUCUGu -3' miRNA: 3'- uUUGCCU---UUUGGGGa------UGU-UUCGGACc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 38289 | 0.66 | 0.999608 |
Target: 5'- aAAACGGcguaucGACCacgagCUACGuAGCCUGGu -3' miRNA: 3'- -UUUGCCuu----UUGGg----GAUGUuUCGGACC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 91437 | 0.66 | 0.999608 |
Target: 5'- cGAGCGGAcugaaggccuGGACgCCgaaGCGgcGCCUGGc -3' miRNA: 3'- -UUUGCCU----------UUUGgGGa--UGUuuCGGACC- -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 177903 | 0.66 | 0.999608 |
Target: 5'- aGAugGGAAgaggauucAACCCgccuguuaugCUGCAGAGCCUc- -3' miRNA: 3'- -UUugCCUU--------UUGGG----------GAUGUUUCGGAcc -5' |
|||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 59549 | 0.66 | 0.999687 |
Target: 5'- -cACcGAAGACCCCc-CGAAGCCgaUGGc -3' miRNA: 3'- uuUGcCUUUUGGGGauGUUUCGG--ACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home