Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15793 | 3' | -49.1 | NC_004065.1 | + | 114589 | 0.79 | 0.74531 |
Target: 5'- cGGCGG-AGugCCCUACGAGGgCUGGu -3' miRNA: 3'- uUUGCCuUUugGGGAUGUUUCgGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 186231 | 0.68 | 0.997669 |
Target: 5'- cGAUGGAGcgaugcuGCCCCU----GGCCUGGc -3' miRNA: 3'- uUUGCCUUu------UGGGGAuguuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 188547 | 0.68 | 0.997669 |
Target: 5'- cGAUGGuuGAACCCCaGCucGAGCCcGGa -3' miRNA: 3'- uUUGCCu-UUUGGGGaUGu-UUCGGaCC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 59549 | 0.66 | 0.999687 |
Target: 5'- -cACcGAAGACCCCc-CGAAGCCgaUGGc -3' miRNA: 3'- uuUGcCUUUUGGGGauGUUUCGG--ACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 177903 | 0.66 | 0.999608 |
Target: 5'- aGAugGGAAgaggauucAACCCgccuguuaugCUGCAGAGCCUc- -3' miRNA: 3'- -UUugCCUU--------UUGGG----------GAUGUUUCGGAcc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 91437 | 0.66 | 0.999608 |
Target: 5'- cGAGCGGAcugaaggccuGGACgCCgaaGCGgcGCCUGGc -3' miRNA: 3'- -UUUGCCU----------UUUGgGGa--UGUuuCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 38289 | 0.66 | 0.999608 |
Target: 5'- aAAACGGcguaucGACCacgagCUACGuAGCCUGGu -3' miRNA: 3'- -UUUGCCuu----UUGGg----GAUGUuUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 45874 | 0.66 | 0.999608 |
Target: 5'- cGACGGAggaAGACCCCagacgcgACAcGAGUCUGu -3' miRNA: 3'- uUUGCCU---UUUGGGGa------UGU-UUCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 166316 | 0.67 | 0.998883 |
Target: 5'- -uGCGGAGGACUCCUAUcAGGuCCgugucuagGGa -3' miRNA: 3'- uuUGCCUUUUGGGGAUGuUUC-GGa-------CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 225794 | 0.67 | 0.998646 |
Target: 5'- gAAACGcaGAGggUCCCcGCGgcccAGGCCUGGu -3' miRNA: 3'- -UUUGC--CUUuuGGGGaUGU----UUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 202214 | 0.67 | 0.998646 |
Target: 5'- --cCGGggGguACCCgacACAGAGCUUGGu -3' miRNA: 3'- uuuGCCuuU--UGGGga-UGUUUCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 110743 | 0.68 | 0.998369 |
Target: 5'- uGGCGGAcguCCCCUucugGCGccGCCUGa -3' miRNA: 3'- uUUGCCUuuuGGGGA----UGUuuCGGACc -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 144603 | 0.68 | 0.998045 |
Target: 5'- uAGCGGAugguCCCCUGC--AGCUUcGGg -3' miRNA: 3'- uUUGCCUuuu-GGGGAUGuuUCGGA-CC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 67186 | 0.68 | 0.998045 |
Target: 5'- uGACGGAccACCCgUACc--GUCUGGg -3' miRNA: 3'- uUUGCCUuuUGGGgAUGuuuCGGACC- -5' |
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15793 | 3' | -49.1 | NC_004065.1 | + | 148571 | 0.8 | 0.683942 |
Target: 5'- --cCGGGucAGCCCCgUGCGGGGCCUGGu -3' miRNA: 3'- uuuGCCUu-UUGGGG-AUGUUUCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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