miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15793 5' -55 NC_004065.1 + 199866 0.65 0.975878
Target:  5'- cAGCCGcuACAUcccgcgGCUGGgUCCGGucgcUCCGCc -3'
miRNA:   3'- -UUGGUu-UGUA------UGGCCgAGGCC----AGGCG- -5'
15793 5' -55 NC_004065.1 + 120546 0.65 0.975878
Target:  5'- -uCCGgu-GUGCCGGCggCGGUCgGCg -3'
miRNA:   3'- uuGGUuugUAUGGCCGagGCCAGgCG- -5'
15793 5' -55 NC_004065.1 + 88405 0.65 0.975878
Target:  5'- cGCCGAGCcgccaccGCCGGCagCGGagcCCGCc -3'
miRNA:   3'- uUGGUUUGua-----UGGCCGagGCCa--GGCG- -5'
15793 5' -55 NC_004065.1 + 481 0.65 0.975878
Target:  5'- cAGCCuc-CGgGCCGcGCgCCGcGUCCGCg -3'
miRNA:   3'- -UUGGuuuGUaUGGC-CGaGGC-CAGGCG- -5'
15793 5' -55 NC_004065.1 + 129734 0.65 0.975878
Target:  5'- cACCAAgucaaacacACAUGC--GCUCUGGUCgGCa -3'
miRNA:   3'- uUGGUU---------UGUAUGgcCGAGGCCAGgCG- -5'
15793 5' -55 NC_004065.1 + 135473 0.66 0.973329
Target:  5'- cGCCcaGGAgGUcACCGGCUCgcgcaGGUUCGCc -3'
miRNA:   3'- uUGG--UUUgUA-UGGCCGAGg----CCAGGCG- -5'
15793 5' -55 NC_004065.1 + 97838 0.66 0.973329
Target:  5'- gAACUuGACGUACgucaGGUUCUcGUCCGCc -3'
miRNA:   3'- -UUGGuUUGUAUGg---CCGAGGcCAGGCG- -5'
15793 5' -55 NC_004065.1 + 36076 0.66 0.973329
Target:  5'- gAACCccauugAAAC-UGCCacCUCUGGUCCGCg -3'
miRNA:   3'- -UUGG------UUUGuAUGGccGAGGCCAGGCG- -5'
15793 5' -55 NC_004065.1 + 138754 0.66 0.973064
Target:  5'- aGACCAcaauAACGUgcaggaugucgagGCCGuGCUCUGG-CUGCu -3'
miRNA:   3'- -UUGGU----UUGUA-------------UGGC-CGAGGCCaGGCG- -5'
15793 5' -55 NC_004065.1 + 36127 0.66 0.973064
Target:  5'- cGAgCAacAACAUggaaACCGGCUCCGaucgcuaGUCCaGCg -3'
miRNA:   3'- -UUgGU--UUGUA----UGGCCGAGGC-------CAGG-CG- -5'
15793 5' -55 NC_004065.1 + 46026 0.66 0.97059
Target:  5'- uGCCGAuggccccguACAUGCUagaGGCccUCCuggcGGUCCGCg -3'
miRNA:   3'- uUGGUU---------UGUAUGG---CCG--AGG----CCAGGCG- -5'
15793 5' -55 NC_004065.1 + 136521 0.66 0.97059
Target:  5'- aAGCCAGGCGgguCCGGggugCUGGUCCu- -3'
miRNA:   3'- -UUGGUUUGUau-GGCCga--GGCCAGGcg -5'
15793 5' -55 NC_004065.1 + 109445 0.66 0.967656
Target:  5'- cGGCCGAG---ACCGGCgCCGGaggucCCGCc -3'
miRNA:   3'- -UUGGUUUguaUGGCCGaGGCCa----GGCG- -5'
15793 5' -55 NC_004065.1 + 124818 0.66 0.96452
Target:  5'- cGCCGGGCGUccacgaacAgCGGCUCCgccuGGUCCa- -3'
miRNA:   3'- uUGGUUUGUA--------UgGCCGAGG----CCAGGcg -5'
15793 5' -55 NC_004065.1 + 55400 0.66 0.96452
Target:  5'- cGAgCGGACAgaagACCGGCcugaugggcugUCCGGggCGCg -3'
miRNA:   3'- -UUgGUUUGUa---UGGCCG-----------AGGCCagGCG- -5'
15793 5' -55 NC_004065.1 + 212217 0.66 0.96452
Target:  5'- gGACCGGACAUcuauacucuacgACCaGCUCCccgggGGUCUGg -3'
miRNA:   3'- -UUGGUUUGUA------------UGGcCGAGG-----CCAGGCg -5'
15793 5' -55 NC_004065.1 + 140020 0.66 0.96452
Target:  5'- cGCCGAGaagcgaCGGCUCCgucgGGUUCGCu -3'
miRNA:   3'- uUGGUUUguaug-GCCGAGG----CCAGGCG- -5'
15793 5' -55 NC_004065.1 + 102097 0.66 0.961177
Target:  5'- cACCAAACAccUGCUcaGGCuccuUCCGGUCUauaaGCg -3'
miRNA:   3'- uUGGUUUGU--AUGG--CCG----AGGCCAGG----CG- -5'
15793 5' -55 NC_004065.1 + 141795 0.66 0.961177
Target:  5'- -gUCAuACAUGguCCGGCUCCuGUuagCCGCg -3'
miRNA:   3'- uuGGUuUGUAU--GGCCGAGGcCA---GGCG- -5'
15793 5' -55 NC_004065.1 + 61390 0.66 0.961177
Target:  5'- cGCC--GC--GCCGGCUCCGc-CCGCg -3'
miRNA:   3'- uUGGuuUGuaUGGCCGAGGCcaGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.