miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15794 3' -57.2 NC_004065.1 + 106557 0.66 0.947751
Target:  5'- uUCGGaCGcAgGGCUUCCGUCaccgacaucaccuguUCGGCCc -3'
miRNA:   3'- uAGUCaGC-UgCCGAGGGCAG---------------AGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 118439 0.66 0.946091
Target:  5'- -----aCGGCGGCgUCCuCGUCuuccUCGGCCg -3'
miRNA:   3'- uagucaGCUGCCG-AGG-GCAG----AGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 199943 0.66 0.946091
Target:  5'- cAUCAGcgCGcgcuccgccACGGCggUCCCGUCUCuggGAUCg -3'
miRNA:   3'- -UAGUCa-GC---------UGCCG--AGGGCAGAG---CUGG- -5'
15794 3' -57.2 NC_004065.1 + 102982 0.66 0.946091
Target:  5'- -gUAGUCG-CGGCgCCCGccCUUGACg -3'
miRNA:   3'- uaGUCAGCuGCCGaGGGCa-GAGCUGg -5'
15794 3' -57.2 NC_004065.1 + 111831 0.66 0.943536
Target:  5'- cGUCAGccgcgccaaccgaaCGGCGGCagCCGUgaCGGCCg -3'
miRNA:   3'- -UAGUCa-------------GCUGCCGagGGCAgaGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 169578 0.66 0.94179
Target:  5'- cUCcGUCGACGuGgUCCUcgGUCUCGguuGCCg -3'
miRNA:   3'- uAGuCAGCUGC-CgAGGG--CAGAGC---UGG- -5'
15794 3' -57.2 NC_004065.1 + 178502 0.66 0.94179
Target:  5'- cAUCGGacgCGACGGCg-UCGUCaUGGCCu -3'
miRNA:   3'- -UAGUCa--GCUGCCGagGGCAGaGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 79287 0.66 0.937273
Target:  5'- cAUCAG-CGugGGCgagCUGUCgaCGGCCu -3'
miRNA:   3'- -UAGUCaGCugCCGag-GGCAGa-GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 23272 0.66 0.937273
Target:  5'- -gCGGUaCGACuGGCgCCCGUagccgCGGCCu -3'
miRNA:   3'- uaGUCA-GCUG-CCGaGGGCAga---GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 14633 0.66 0.937273
Target:  5'- uAUCA-UCGACaGCUCgCGUCUCGcGCg -3'
miRNA:   3'- -UAGUcAGCUGcCGAGgGCAGAGC-UGg -5'
15794 3' -57.2 NC_004065.1 + 153348 0.66 0.937273
Target:  5'- uUCGGggaCGGCGGCgccgacgcgaUCCGUUUCGAgCCg -3'
miRNA:   3'- uAGUCa--GCUGCCGa---------GGGCAGAGCU-GG- -5'
15794 3' -57.2 NC_004065.1 + 223759 0.66 0.937273
Target:  5'- ----uUCGuCGGCUCCC-UCUCGuCCc -3'
miRNA:   3'- uagucAGCuGCCGAGGGcAGAGCuGG- -5'
15794 3' -57.2 NC_004065.1 + 24119 0.66 0.932538
Target:  5'- cGUCGGccUCGGCGGCccaUCCGUCaagggCGACg -3'
miRNA:   3'- -UAGUC--AGCUGCCGa--GGGCAGa----GCUGg -5'
15794 3' -57.2 NC_004065.1 + 43534 0.66 0.932538
Target:  5'- --gAGUCGAuCGGCgUCCCG-CUCcgGAUCg -3'
miRNA:   3'- uagUCAGCU-GCCG-AGGGCaGAG--CUGG- -5'
15794 3' -57.2 NC_004065.1 + 89871 0.66 0.932538
Target:  5'- uAUCGuuGUCGACGGCgCCa-UCgUCGGCCc -3'
miRNA:   3'- -UAGU--CAGCUGCCGaGGgcAG-AGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 1929 0.66 0.927584
Target:  5'- -cCAGUCuGCGGCg-UCGUCUCcACCg -3'
miRNA:   3'- uaGUCAGcUGCCGagGGCAGAGcUGG- -5'
15794 3' -57.2 NC_004065.1 + 170913 0.66 0.927584
Target:  5'- cUCGGUCGGuCGGU--CUGUCUCGugUc -3'
miRNA:   3'- uAGUCAGCU-GCCGagGGCAGAGCugG- -5'
15794 3' -57.2 NC_004065.1 + 202259 0.66 0.922411
Target:  5'- -cCAGaCGGCGGCgCagCGUCUCGAUg -3'
miRNA:   3'- uaGUCaGCUGCCGaGg-GCAGAGCUGg -5'
15794 3' -57.2 NC_004065.1 + 200308 0.66 0.922411
Target:  5'- cUCAucGUCcugGGCGGCgUCCGccgCUCGACCg -3'
miRNA:   3'- uAGU--CAG---CUGCCGaGGGCa--GAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 108248 0.66 0.922411
Target:  5'- cUC-GUCGGCGcUUUCCGUC-CGACCc -3'
miRNA:   3'- uAGuCAGCUGCcGAGGGCAGaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.