miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15794 3' -57.2 NC_004065.1 + 122835 1.1 0.003363
Target:  5'- uAUCAGUCGACGGCUCCCGUCUCGACCg -3'
miRNA:   3'- -UAGUCAGCUGCCGAGGGCAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 99539 0.79 0.306344
Target:  5'- --uGGUCGGC-GCUCCCGUCUCG-CCg -3'
miRNA:   3'- uagUCAGCUGcCGAGGGCAGAGCuGG- -5'
15794 3' -57.2 NC_004065.1 + 2549 0.77 0.412029
Target:  5'- gAUCGGUCGACGGCcgUCCGUCUucCGugUu -3'
miRNA:   3'- -UAGUCAGCUGCCGa-GGGCAGA--GCugG- -5'
15794 3' -57.2 NC_004065.1 + 151622 0.77 0.412029
Target:  5'- cUCGGUCGGCGGCgUCCCGUucCUCucCCu -3'
miRNA:   3'- uAGUCAGCUGCCG-AGGGCA--GAGcuGG- -5'
15794 3' -57.2 NC_004065.1 + 176867 0.76 0.463723
Target:  5'- gGUCGGgcgGACGGCUCCCGUCgaGGCUc -3'
miRNA:   3'- -UAGUCag-CUGCCGAGGGCAGagCUGG- -5'
15794 3' -57.2 NC_004065.1 + 125849 0.75 0.481697
Target:  5'- -aCGGUCGugGGCagCUGguUCUCGGCCg -3'
miRNA:   3'- uaGUCAGCugCCGagGGC--AGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 65224 0.74 0.537485
Target:  5'- --gAGUgcCGGCGGUggcgCCCGUCUCGACa -3'
miRNA:   3'- uagUCA--GCUGCCGa---GGGCAGAGCUGg -5'
15794 3' -57.2 NC_004065.1 + 191078 0.74 0.537485
Target:  5'- --aGGUUGAuuCGGuCUCCCGUCUUGAUCa -3'
miRNA:   3'- uagUCAGCU--GCC-GAGGGCAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 22924 0.74 0.546057
Target:  5'- -gCGGUCGGCGGUU-CCGUCUCGucgucagauugucGCCg -3'
miRNA:   3'- uaGUCAGCUGCCGAgGGCAGAGC-------------UGG- -5'
15794 3' -57.2 NC_004065.1 + 127271 0.73 0.584623
Target:  5'- gAUgGGUCGcCGGCgucucugUCCUGUCUCGAUCc -3'
miRNA:   3'- -UAgUCAGCuGCCG-------AGGGCAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 142507 0.73 0.595333
Target:  5'- gGUCuGUCGACGGCUCuuGUCcCuGCUg -3'
miRNA:   3'- -UAGuCAGCUGCCGAGggCAGaGcUGG- -5'
15794 3' -57.2 NC_004065.1 + 3038 0.72 0.653071
Target:  5'- -aCGGUCGAacgacgaCGGuUUCCCGUCUCGuuCCg -3'
miRNA:   3'- uaGUCAGCU-------GCC-GAGGGCAGAGCu-GG- -5'
15794 3' -57.2 NC_004065.1 + 155406 0.72 0.66382
Target:  5'- -gCGGUggCGGCGGUUCCgGgaaCUCGGCCg -3'
miRNA:   3'- uaGUCA--GCUGCCGAGGgCa--GAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 199240 0.72 0.673568
Target:  5'- cGUCAGUCGucaucguCGGCgUCCgCGUCcgcCGACCu -3'
miRNA:   3'- -UAGUCAGCu------GCCG-AGG-GCAGa--GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 24968 0.72 0.683284
Target:  5'- gGUCGGUCGugGGUgggCGUCccUCGGCCu -3'
miRNA:   3'- -UAGUCAGCugCCGaggGCAG--AGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 18345 0.72 0.683284
Target:  5'- gAUCGuUCGACGGCUCCCc-CUCGAa- -3'
miRNA:   3'- -UAGUcAGCUGCCGAGGGcaGAGCUgg -5'
15794 3' -57.2 NC_004065.1 + 120563 0.71 0.728304
Target:  5'- gGUCGGcgCGAgcgggcgggaccucCGGCgCCgGUCUCGGCCg -3'
miRNA:   3'- -UAGUCa-GCU--------------GCCGaGGgCAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 158559 0.71 0.740496
Target:  5'- -cCAGUCGaACGGCUCCUGcCcUGGCUu -3'
miRNA:   3'- uaGUCAGC-UGCCGAGGGCaGaGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 165452 0.7 0.749775
Target:  5'- -cCAGUCGACGcGCUCCCcgcggCGGCUc -3'
miRNA:   3'- uaGUCAGCUGC-CGAGGGcaga-GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 49033 0.7 0.777011
Target:  5'- gGUCAuGUCGACGaGCcggaccgaaacCCCGUC-CGGCCa -3'
miRNA:   3'- -UAGU-CAGCUGC-CGa----------GGGCAGaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.