miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15794 3' -57.2 NC_004065.1 + 152020 0.67 0.917018
Target:  5'- cUCAGcUCGaACGGCUCCucCGUCccggggCGGCUc -3'
miRNA:   3'- uAGUC-AGC-UGCCGAGG--GCAGa-----GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 94613 0.67 0.917018
Target:  5'- -gCGGUcCGAuCGGCUCCUgacgggGUCgggcgCGGCCg -3'
miRNA:   3'- uaGUCA-GCU-GCCGAGGG------CAGa----GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 28313 0.67 0.911408
Target:  5'- cUCGGaUCGACGGCcucaUCCgauacgCGUCUCGAa- -3'
miRNA:   3'- uAGUC-AGCUGCCG----AGG------GCAGAGCUgg -5'
15794 3' -57.2 NC_004065.1 + 202744 0.67 0.911408
Target:  5'- cGUC-GUCGGCGGCgccgCCgGUCUCuucguCCu -3'
miRNA:   3'- -UAGuCAGCUGCCGa---GGgCAGAGcu---GG- -5'
15794 3' -57.2 NC_004065.1 + 109899 0.67 0.911408
Target:  5'- ---cGUCGGgGGgUCCCGgCUCGuCCg -3'
miRNA:   3'- uaguCAGCUgCCgAGGGCaGAGCuGG- -5'
15794 3' -57.2 NC_004065.1 + 174446 0.67 0.910835
Target:  5'- cUCGuGUcCGACGGCgggaCCGUCuacuacgUCGACCc -3'
miRNA:   3'- uAGU-CA-GCUGCCGag--GGCAG-------AGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 70488 0.67 0.907938
Target:  5'- uUCAGggacaccgugaaggCGAUGGCggcgCCCuUCUCGACg -3'
miRNA:   3'- uAGUCa-------------GCUGCCGa---GGGcAGAGCUGg -5'
15794 3' -57.2 NC_004065.1 + 168565 0.67 0.905581
Target:  5'- -gCGG-CGGCGGCgacagCgggCGUCUCGGCCc -3'
miRNA:   3'- uaGUCaGCUGCCGa----Gg--GCAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 202137 0.67 0.905581
Target:  5'- cGUCGGcaggaUCgGACGGaggUCCCGgccguccaUCUCGACCa -3'
miRNA:   3'- -UAGUC-----AG-CUGCCg--AGGGC--------AGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 116257 0.67 0.905581
Target:  5'- aGUCGGUCGucugccgccGCGGCUgUCc-CUCGGCCu -3'
miRNA:   3'- -UAGUCAGC---------UGCCGAgGGcaGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 146850 0.67 0.899539
Target:  5'- cUCAG-CGACGucGCgCgCCGUgUCGACCg -3'
miRNA:   3'- uAGUCaGCUGC--CGaG-GGCAgAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 145986 0.68 0.88682
Target:  5'- -cCAGaUGGCGGacgCCGUCUCGAUCg -3'
miRNA:   3'- uaGUCaGCUGCCgagGGCAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 115204 0.68 0.88682
Target:  5'- --gAGUCGGC-GCUCCC-UCUCuGCCg -3'
miRNA:   3'- uagUCAGCUGcCGAGGGcAGAGcUGG- -5'
15794 3' -57.2 NC_004065.1 + 69203 0.68 0.88015
Target:  5'- aGUCGcuGUCGACGGUgaacaUCCCGUCgcugaacgaGAUCa -3'
miRNA:   3'- -UAGU--CAGCUGCCG-----AGGGCAGag-------CUGG- -5'
15794 3' -57.2 NC_004065.1 + 85751 0.68 0.88015
Target:  5'- uUCAG-CGAuCGGC-CCgGgucUCUCGACCu -3'
miRNA:   3'- uAGUCaGCU-GCCGaGGgC---AGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 100376 0.68 0.88015
Target:  5'- -cCGGUCGACGGCcagUCUGUgUUccaGACCg -3'
miRNA:   3'- uaGUCAGCUGCCGa--GGGCAgAG---CUGG- -5'
15794 3' -57.2 NC_004065.1 + 111793 0.68 0.858944
Target:  5'- cGUCcGUCGACGGCUCCga---UGACCg -3'
miRNA:   3'- -UAGuCAGCUGCCGAGGgcagaGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 191405 0.68 0.858944
Target:  5'- gAUC-GUCGG-GGCUUUCG-CUCGGCCa -3'
miRNA:   3'- -UAGuCAGCUgCCGAGGGCaGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 132208 0.68 0.858944
Target:  5'- --aGGUCGaacuccucGCGGCUCUCGUCggUGAUCa -3'
miRNA:   3'- uagUCAGC--------UGCCGAGGGCAGa-GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 86897 0.68 0.851493
Target:  5'- --aGGUCG-CGGCgCCgGUCUCGcCCu -3'
miRNA:   3'- uagUCAGCuGCCGaGGgCAGAGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.