miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15794 3' -57.2 NC_004065.1 + 1929 0.66 0.927584
Target:  5'- -cCAGUCuGCGGCg-UCGUCUCcACCg -3'
miRNA:   3'- uaGUCAGcUGCCGagGGCAGAGcUGG- -5'
15794 3' -57.2 NC_004065.1 + 2549 0.77 0.412029
Target:  5'- gAUCGGUCGACGGCcgUCCGUCUucCGugUu -3'
miRNA:   3'- -UAGUCAGCUGCCGa-GGGCAGA--GCugG- -5'
15794 3' -57.2 NC_004065.1 + 3038 0.72 0.653071
Target:  5'- -aCGGUCGAacgacgaCGGuUUCCCGUCUCGuuCCg -3'
miRNA:   3'- uaGUCAGCU-------GCC-GAGGGCAGAGCu-GG- -5'
15794 3' -57.2 NC_004065.1 + 14633 0.66 0.937273
Target:  5'- uAUCA-UCGACaGCUCgCGUCUCGcGCg -3'
miRNA:   3'- -UAGUcAGCUGcCGAGgGCAGAGC-UGg -5'
15794 3' -57.2 NC_004065.1 + 18345 0.72 0.683284
Target:  5'- gAUCGuUCGACGGCUCCCc-CUCGAa- -3'
miRNA:   3'- -UAGUcAGCUGCCGAGGGcaGAGCUgg -5'
15794 3' -57.2 NC_004065.1 + 22924 0.74 0.546057
Target:  5'- -gCGGUCGGCGGUU-CCGUCUCGucgucagauugucGCCg -3'
miRNA:   3'- uaGUCAGCUGCCGAgGGCAGAGC-------------UGG- -5'
15794 3' -57.2 NC_004065.1 + 23272 0.66 0.937273
Target:  5'- -gCGGUaCGACuGGCgCCCGUagccgCGGCCu -3'
miRNA:   3'- uaGUCA-GCUG-CCGaGGGCAga---GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 24119 0.66 0.932538
Target:  5'- cGUCGGccUCGGCGGCccaUCCGUCaagggCGACg -3'
miRNA:   3'- -UAGUC--AGCUGCCGa--GGGCAGa----GCUGg -5'
15794 3' -57.2 NC_004065.1 + 24968 0.72 0.683284
Target:  5'- gGUCGGUCGugGGUgggCGUCccUCGGCCu -3'
miRNA:   3'- -UAGUCAGCugCCGaggGCAG--AGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 28313 0.67 0.911408
Target:  5'- cUCGGaUCGACGGCcucaUCCgauacgCGUCUCGAa- -3'
miRNA:   3'- uAGUC-AGCUGCCG----AGG------GCAGAGCUgg -5'
15794 3' -57.2 NC_004065.1 + 31382 0.69 0.803179
Target:  5'- gAUCGGcCGGCGGaUCC--UCUCGGCCg -3'
miRNA:   3'- -UAGUCaGCUGCCgAGGgcAGAGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 43534 0.66 0.932538
Target:  5'- --gAGUCGAuCGGCgUCCCG-CUCcgGAUCg -3'
miRNA:   3'- uagUCAGCU-GCCG-AGGGCaGAG--CUGG- -5'
15794 3' -57.2 NC_004065.1 + 49033 0.7 0.777011
Target:  5'- gGUCAuGUCGACGaGCcggaccgaaacCCCGUC-CGGCCa -3'
miRNA:   3'- -UAGU-CAGCUGC-CGa----------GGGCAGaGCUGG- -5'
15794 3' -57.2 NC_004065.1 + 52593 0.69 0.811627
Target:  5'- cAUCGG-CGAUGGCgacagCuuGUCUCG-CCu -3'
miRNA:   3'- -UAGUCaGCUGCCGa----GggCAGAGCuGG- -5'
15794 3' -57.2 NC_004065.1 + 59638 0.69 0.82807
Target:  5'- cGUCGGUCGAcaCGGUccagCCgGUCUCGgagcacGCCa -3'
miRNA:   3'- -UAGUCAGCU--GCCGa---GGgCAGAGC------UGG- -5'
15794 3' -57.2 NC_004065.1 + 65224 0.74 0.537485
Target:  5'- --gAGUgcCGGCGGUggcgCCCGUCUCGACa -3'
miRNA:   3'- uagUCA--GCUGCCGa---GGGCAGAGCUGg -5'
15794 3' -57.2 NC_004065.1 + 69203 0.68 0.88015
Target:  5'- aGUCGcuGUCGACGGUgaacaUCCCGUCgcugaacgaGAUCa -3'
miRNA:   3'- -UAGU--CAGCUGCCG-----AGGGCAGag-------CUGG- -5'
15794 3' -57.2 NC_004065.1 + 70488 0.67 0.907938
Target:  5'- uUCAGggacaccgugaaggCGAUGGCggcgCCCuUCUCGACg -3'
miRNA:   3'- uAGUCa-------------GCUGCCGa---GGGcAGAGCUGg -5'
15794 3' -57.2 NC_004065.1 + 79287 0.66 0.937273
Target:  5'- cAUCAG-CGugGGCgagCUGUCgaCGGCCu -3'
miRNA:   3'- -UAGUCaGCugCCGag-GGCAGa-GCUGG- -5'
15794 3' -57.2 NC_004065.1 + 85751 0.68 0.88015
Target:  5'- uUCAG-CGAuCGGC-CCgGgucUCUCGACCu -3'
miRNA:   3'- uAGUCaGCU-GCCGaGGgC---AGAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.