Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15794 | 3' | -57.2 | NC_004065.1 | + | 99372 | 0.69 | 0.843859 |
Target: 5'- -gCAG-CGACGGCgccgacugUCCCGaCUCGAgCg -3' miRNA: 3'- uaGUCaGCUGCCG--------AGGGCaGAGCUgG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 136485 | 0.7 | 0.785863 |
Target: 5'- ----aUCGGCGGCUCCggcgGUCUgGACCc -3' miRNA: 3'- uagucAGCUGCCGAGGg---CAGAgCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 31382 | 0.69 | 0.803179 |
Target: 5'- gAUCGGcCGGCGGaUCC--UCUCGGCCg -3' miRNA: 3'- -UAGUCaGCUGCCgAGGgcAGAGCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 52593 | 0.69 | 0.811627 |
Target: 5'- cAUCGG-CGAUGGCgacagCuuGUCUCG-CCu -3' miRNA: 3'- -UAGUCaGCUGCCGa----GggCAGAGCuGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 111367 | 0.69 | 0.819926 |
Target: 5'- uUCAucGUCGGC-GCUCCCGcUCUC-ACCa -3' miRNA: 3'- uAGU--CAGCUGcCGAGGGC-AGAGcUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 130941 | 0.69 | 0.819926 |
Target: 5'- uGUUGGUCGACGGCaCCCccaUCGGCa -3' miRNA: 3'- -UAGUCAGCUGCCGaGGGcagAGCUGg -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 95858 | 0.69 | 0.82807 |
Target: 5'- aGUCA-UCGACGGUgcacaucggCCCGUCUCugagucgcaGACCc -3' miRNA: 3'- -UAGUcAGCUGCCGa--------GGGCAGAG---------CUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 59638 | 0.69 | 0.82807 |
Target: 5'- cGUCGGUCGAcaCGGUccagCCgGUCUCGgagcacGCCa -3' miRNA: 3'- -UAGUCAGCU--GCCGa---GGgCAGAGC------UGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 176212 | 0.69 | 0.836049 |
Target: 5'- --gAGUCuGACGGUUCaCCGgcUCUCGGCg -3' miRNA: 3'- uagUCAG-CUGCCGAG-GGC--AGAGCUGg -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 92772 | 0.7 | 0.777011 |
Target: 5'- -cCAGUCGACuGGUUCaCCGgcCUaCGGCCg -3' miRNA: 3'- uaGUCAGCUG-CCGAG-GGCa-GA-GCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 49033 | 0.7 | 0.777011 |
Target: 5'- gGUCAuGUCGACGaGCcggaccgaaacCCCGUC-CGGCCa -3' miRNA: 3'- -UAGU-CAGCUGC-CGa----------GGGCAGaGCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 165452 | 0.7 | 0.749775 |
Target: 5'- -cCAGUCGACGcGCUCCCcgcggCGGCUc -3' miRNA: 3'- uaGUCAGCUGC-CGAGGGcaga-GCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 176867 | 0.76 | 0.463723 |
Target: 5'- gGUCGGgcgGACGGCUCCCGUCgaGGCUc -3' miRNA: 3'- -UAGUCag-CUGCCGAGGGCAGagCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 125849 | 0.75 | 0.481697 |
Target: 5'- -aCGGUCGugGGCagCUGguUCUCGGCCg -3' miRNA: 3'- uaGUCAGCugCCGagGGC--AGAGCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 22924 | 0.74 | 0.546057 |
Target: 5'- -gCGGUCGGCGGUU-CCGUCUCGucgucagauugucGCCg -3' miRNA: 3'- uaGUCAGCUGCCGAgGGCAGAGC-------------UGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 127271 | 0.73 | 0.584623 |
Target: 5'- gAUgGGUCGcCGGCgucucugUCCUGUCUCGAUCc -3' miRNA: 3'- -UAgUCAGCuGCCG-------AGGGCAGAGCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 199240 | 0.72 | 0.673568 |
Target: 5'- cGUCAGUCGucaucguCGGCgUCCgCGUCcgcCGACCu -3' miRNA: 3'- -UAGUCAGCu------GCCG-AGG-GCAGa--GCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 24968 | 0.72 | 0.683284 |
Target: 5'- gGUCGGUCGugGGUgggCGUCccUCGGCCu -3' miRNA: 3'- -UAGUCAGCugCCGaggGCAG--AGCUGG- -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 18345 | 0.72 | 0.683284 |
Target: 5'- gAUCGuUCGACGGCUCCCc-CUCGAa- -3' miRNA: 3'- -UAGUcAGCUGCCGAGGGcaGAGCUgg -5' |
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15794 | 3' | -57.2 | NC_004065.1 | + | 120563 | 0.71 | 0.728304 |
Target: 5'- gGUCGGcgCGAgcgggcgggaccucCGGCgCCgGUCUCGGCCg -3' miRNA: 3'- -UAGUCa-GCU--------------GCCGaGGgCAGAGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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