miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15794 5' -54.9 NC_004065.1 + 35079 0.66 0.972476
Target:  5'- cCAGcuGGCGAGacgGGGGCUGUcUCuGuGCGAg -3'
miRNA:   3'- -GUC--UCGCUCaa-CCUCGACA-AG-C-CGCU- -5'
15794 5' -54.9 NC_004065.1 + 4396 0.66 0.972476
Target:  5'- cCGGAGUGcuGUUcGGAGCgGUggccaCGGCGGg -3'
miRNA:   3'- -GUCUCGCu-CAA-CCUCGaCAa----GCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 83117 0.66 0.969672
Target:  5'- aAGAuGCGcgg-GGAGCUGUg-GGCGAg -3'
miRNA:   3'- gUCU-CGCucaaCCUCGACAagCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 161857 0.66 0.969672
Target:  5'- uCGGAGgGAGUacguagGGAGgUGcuccaUCGGCGGc -3'
miRNA:   3'- -GUCUCgCUCAa-----CCUCgACa----AGCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 200949 0.66 0.963462
Target:  5'- uCGGAGCGcag-GGAGCg---CGGCGGc -3'
miRNA:   3'- -GUCUCGCucaaCCUCGacaaGCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 221832 0.66 0.963462
Target:  5'- uCAGaAGCGAgGUUGGGGCg--UCgGGUGGg -3'
miRNA:   3'- -GUC-UCGCU-CAACCUCGacaAG-CCGCU- -5'
15794 5' -54.9 NC_004065.1 + 169914 0.66 0.962796
Target:  5'- uCGGGGaCGGGUUGGGGgaugauaacggGUUCGGgGAc -3'
miRNA:   3'- -GUCUC-GCUCAACCUCga---------CAAGCCgCU- -5'
15794 5' -54.9 NC_004065.1 + 209241 0.67 0.956416
Target:  5'- gAG-GCGAGUcuucGGAGCUGUacgcuagGGCGAu -3'
miRNA:   3'- gUCuCGCUCAa---CCUCGACAag-----CCGCU- -5'
15794 5' -54.9 NC_004065.1 + 199187 0.68 0.934438
Target:  5'- uGGAGCGGGgaggGGAGggGUUuaugugaUGGCGAg -3'
miRNA:   3'- gUCUCGCUCaa--CCUCgaCAA-------GCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 146839 0.68 0.929942
Target:  5'- gAGAGCGGGccgccgGGAGCgccugGUcugcaUCGGCGc -3'
miRNA:   3'- gUCUCGCUCaa----CCUCGa----CA-----AGCCGCu -5'
15794 5' -54.9 NC_004065.1 + 76247 0.69 0.904042
Target:  5'- gCAGAGCGAauaGUUGGGGUUuuugcauauuaaagcGgugUCGGUGAu -3'
miRNA:   3'- -GUCUCGCU---CAACCUCGA---------------Ca--AGCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 99699 0.71 0.785083
Target:  5'- aAGAGCGAGagcucccgGGAGCUGacgaaGGCGGu -3'
miRNA:   3'- gUCUCGCUCaa------CCUCGACaag--CCGCU- -5'
15794 5' -54.9 NC_004065.1 + 38082 0.71 0.785083
Target:  5'- aCAGGcccGUGAGgcUGGAGCUG-UCGGCGu -3'
miRNA:   3'- -GUCU---CGCUCa-ACCUCGACaAGCCGCu -5'
15794 5' -54.9 NC_004065.1 + 135723 0.72 0.747922
Target:  5'- -cGGGCGGGgaucuggUGGAGCUGUugcugcuuUCGcGCGAc -3'
miRNA:   3'- guCUCGCUCa------ACCUCGACA--------AGC-CGCU- -5'
15794 5' -54.9 NC_004065.1 + 69798 0.73 0.699322
Target:  5'- gCAGAGCGAGgcGGAGaagaGgaCGGCGGa -3'
miRNA:   3'- -GUCUCGCUCaaCCUCga--CaaGCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 75788 0.74 0.669437
Target:  5'- gCGGucGGCGAGggGGAGCgg--CGGCGAg -3'
miRNA:   3'- -GUC--UCGCUCaaCCUCGacaaGCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 223884 0.75 0.599042
Target:  5'- aCGGAGaugaCGAGUaGGAGCUGgcggCGGCGGc -3'
miRNA:   3'- -GUCUC----GCUCAaCCUCGACaa--GCCGCU- -5'
15794 5' -54.9 NC_004065.1 + 122873 1.09 0.005598
Target:  5'- gCAGAGCGAGUUGGAGCUGUUCGGCGAa -3'
miRNA:   3'- -GUCUCGCUCAACCUCGACAAGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.