miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15795 5' -53.3 NC_004065.1 + 88766 0.66 0.993866
Target:  5'- -aUGUaCCUGUAGCGCAUGaaG-CGGu -3'
miRNA:   3'- ccACAaGGACGUUGCGUGCgaCaGCC- -5'
15795 5' -53.3 NC_004065.1 + 6491 0.66 0.993866
Target:  5'- uGGUGUUCUgcguaugGCucGCGUACGUguucUCGGu -3'
miRNA:   3'- -CCACAAGGa------CGu-UGCGUGCGac--AGCC- -5'
15795 5' -53.3 NC_004065.1 + 141990 0.66 0.992964
Target:  5'- gGGaGUcgaCCUGCu-CGCGCGCaacGUCGGc -3'
miRNA:   3'- -CCaCAa--GGACGuuGCGUGCGa--CAGCC- -5'
15795 5' -53.3 NC_004065.1 + 201507 0.66 0.992375
Target:  5'- cGGUGaagaucuucagcagUCCcaUGCGAcggagcucCGCgGCGCUGUCGGc -3'
miRNA:   3'- -CCACa-------------AGG--ACGUU--------GCG-UGCGACAGCC- -5'
15795 5' -53.3 NC_004065.1 + 168555 0.66 0.99196
Target:  5'- uGGUGgacgCCauggcGCAGCGCAUcacggaGCggGUCGGg -3'
miRNA:   3'- -CCACaa--GGa----CGUUGCGUG------CGa-CAGCC- -5'
15795 5' -53.3 NC_004065.1 + 197260 0.66 0.99196
Target:  5'- -aUGUUCCUcgaGCAGCGCuacgaGCGCaUGggCGGc -3'
miRNA:   3'- ccACAAGGA---CGUUGCG-----UGCG-ACa-GCC- -5'
15795 5' -53.3 NC_004065.1 + 848 0.66 0.989614
Target:  5'- aGGUGUUac-GCGgaGCGCAUGaCUGcCGGg -3'
miRNA:   3'- -CCACAAggaCGU--UGCGUGC-GACaGCC- -5'
15795 5' -53.3 NC_004065.1 + 209757 0.66 0.989484
Target:  5'- cGGUGUuauaagacgagcgUCUUgGCAA-GCACcacuGCUGUCGGu -3'
miRNA:   3'- -CCACA-------------AGGA-CGUUgCGUG----CGACAGCC- -5'
15795 5' -53.3 NC_004065.1 + 66282 0.66 0.988255
Target:  5'- uGGUGgcCCUGCccgaguucACGgaCACGCUG-CGGa -3'
miRNA:   3'- -CCACaaGGACGu-------UGC--GUGCGACaGCC- -5'
15795 5' -53.3 NC_004065.1 + 86909 0.66 0.988255
Target:  5'- cGGUcucgCCcucgGCGGCGCGCGC-GUCGa -3'
miRNA:   3'- -CCAcaa-GGa---CGUUGCGUGCGaCAGCc -5'
15795 5' -53.3 NC_004065.1 + 24345 0.66 0.988255
Target:  5'- ----aUCCUuGaCGaucucGCGCAUGCUGUCGGc -3'
miRNA:   3'- ccacaAGGA-C-GU-----UGCGUGCGACAGCC- -5'
15795 5' -53.3 NC_004065.1 + 60646 0.67 0.986763
Target:  5'- cGUGUUgCCccGCGccACGCACGC-GUCGa -3'
miRNA:   3'- cCACAA-GGa-CGU--UGCGUGCGaCAGCc -5'
15795 5' -53.3 NC_004065.1 + 169563 0.67 0.985129
Target:  5'- --gGUUUCUGC-GCGCuguugcCGCUGUCGcGg -3'
miRNA:   3'- ccaCAAGGACGuUGCGu-----GCGACAGC-C- -5'
15795 5' -53.3 NC_004065.1 + 153886 0.67 0.983346
Target:  5'- uGGUGUUCgUGgGGaccCGCugGCgGUCuGGg -3'
miRNA:   3'- -CCACAAGgACgUU---GCGugCGaCAG-CC- -5'
15795 5' -53.3 NC_004065.1 + 99487 0.67 0.983346
Target:  5'- ----gUCgCUGuCGGCGCAUGCgcgGUCGGu -3'
miRNA:   3'- ccacaAG-GAC-GUUGCGUGCGa--CAGCC- -5'
15795 5' -53.3 NC_004065.1 + 992 0.67 0.983346
Target:  5'- cGGUG--CCUgGCA--GC-CGCUGUCGGg -3'
miRNA:   3'- -CCACaaGGA-CGUugCGuGCGACAGCC- -5'
15795 5' -53.3 NC_004065.1 + 66096 0.67 0.983346
Target:  5'- --cGUUCCUGCA---CGCGCUGggGGg -3'
miRNA:   3'- ccaCAAGGACGUugcGUGCGACagCC- -5'
15795 5' -53.3 NC_004065.1 + 64283 0.67 0.981202
Target:  5'- --aGUUCCUggaaggcGCGGCGCGCGUc-UCGGa -3'
miRNA:   3'- ccaCAAGGA-------CGUUGCGUGCGacAGCC- -5'
15795 5' -53.3 NC_004065.1 + 103484 0.68 0.977024
Target:  5'- cGUGcUUCgUGUuGCGUACGCUGaUGGa -3'
miRNA:   3'- cCAC-AAGgACGuUGCGUGCGACaGCC- -5'
15795 5' -53.3 NC_004065.1 + 65449 0.68 0.977024
Target:  5'- uGGUGgcUCUGgAGCGCgaaGCgGUCGGc -3'
miRNA:   3'- -CCACaaGGACgUUGCGug-CGaCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.