miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 57631 0.66 0.934128
Target:  5'- --aCUGaaagaaaGACCGCACgCUCGGGGAAUu -3'
miRNA:   3'- augGGCg------CUGGUGUG-GAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 143140 0.66 0.934128
Target:  5'- gGCgCCGCGACC-UGCgUCGGuGAugAc -3'
miRNA:   3'- aUG-GGCGCUGGuGUGgAGCCuCUugU- -5'
15796 3' -57.2 NC_004065.1 + 197134 0.66 0.934128
Target:  5'- -cCCCGacagGACgGCAUCUCGGAcgagGAGCGc -3'
miRNA:   3'- auGGGCg---CUGgUGUGGAGCCU----CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 222820 0.66 0.933645
Target:  5'- gGCCCgagaagccgcuagGCGGCCACAgCUCGGucgucauuGACAg -3'
miRNA:   3'- aUGGG-------------CGCUGGUGUgGAGCCuc------UUGU- -5'
15796 3' -57.2 NC_004065.1 + 71980 0.66 0.929191
Target:  5'- aGCCCggagGCGACgCAUGCCcUGGAGGugAg -3'
miRNA:   3'- aUGGG----CGCUG-GUGUGGaGCCUCUugU- -5'
15796 3' -57.2 NC_004065.1 + 37880 0.66 0.929191
Target:  5'- gAUCgGCacgauguuCCGCACCUCGGAcGAGCu -3'
miRNA:   3'- aUGGgCGcu------GGUGUGGAGCCU-CUUGu -5'
15796 3' -57.2 NC_004065.1 + 133394 0.66 0.929191
Target:  5'- aGCUCGCGACCGC-CggCGacGAGGACGa -3'
miRNA:   3'- aUGGGCGCUGGUGuGgaGC--CUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 182737 0.66 0.929191
Target:  5'- gACgCCGgGGCCACcgacACgUCGGcGAACAg -3'
miRNA:   3'- aUG-GGCgCUGGUG----UGgAGCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 83200 0.66 0.928685
Target:  5'- gGCCCGCucucgagucccccGugCGCGCCgcCGGgaGGAGCAu -3'
miRNA:   3'- aUGGGCG-------------CugGUGUGGa-GCC--UCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 79614 0.66 0.924029
Target:  5'- -cCCCGgGAUCACgucuccaucGCCUCGugcGAGGACGa -3'
miRNA:   3'- auGGGCgCUGGUG---------UGGAGC---CUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 111543 0.66 0.924029
Target:  5'- gGCCCGgGACgGCACCU-GGcacuucguGAGCGg -3'
miRNA:   3'- aUGGGCgCUGgUGUGGAgCCu-------CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 81602 0.66 0.922436
Target:  5'- cGCCCagGCGACCAUgcuggccgagacguACUUCGGcguccAGGACAu -3'
miRNA:   3'- aUGGG--CGCUGGUG--------------UGGAGCC-----UCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 62505 0.66 0.918643
Target:  5'- -cCCCGCuACCACagccguACCUUcGAGAGCAu -3'
miRNA:   3'- auGGGCGcUGGUG------UGGAGcCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 25279 0.66 0.918643
Target:  5'- gGCCUGUcgGGCgUACACCcuacCGGAGGGCAa -3'
miRNA:   3'- aUGGGCG--CUG-GUGUGGa---GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 4489 0.66 0.916983
Target:  5'- gACUgGCGAUaagacguucacgugCAUGCCUgCGGAGAACGu -3'
miRNA:   3'- aUGGgCGCUG--------------GUGUGGA-GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 141413 0.66 0.913033
Target:  5'- aGCUgGCGGCCAuCGCCgagcucaUGGAGGGCc -3'
miRNA:   3'- aUGGgCGCUGGU-GUGGa------GCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 121603 0.66 0.913033
Target:  5'- gGCCCGgGACC-C-CC-CGGuAGGGCAg -3'
miRNA:   3'- aUGGGCgCUGGuGuGGaGCC-UCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 18281 0.66 0.907202
Target:  5'- gACCUGCGAgauCACCUCGucGAGCGg -3'
miRNA:   3'- aUGGGCGCUgguGUGGAGCcuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 138117 0.66 0.907202
Target:  5'- --aCCGCGACgGCgaucGCgUCGGuGAGCAu -3'
miRNA:   3'- augGGCGCUGgUG----UGgAGCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 109889 0.66 0.907202
Target:  5'- --gCCGCGGCCGCG--UCGGGGggUc -3'
miRNA:   3'- augGGCGCUGGUGUggAGCCUCuuGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.