Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15796 | 3' | -57.2 | NC_004065.1 | + | 138117 | 0.66 | 0.907202 |
Target: 5'- --aCCGCGACgGCgaucGCgUCGGuGAGCAu -3' miRNA: 3'- augGGCGCUGgUG----UGgAGCCuCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 222820 | 0.66 | 0.933645 |
Target: 5'- gGCCCgagaagccgcuagGCGGCCACAgCUCGGucgucauuGACAg -3' miRNA: 3'- aUGGG-------------CGCUGGUGUgGAGCCuc------UUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 57631 | 0.66 | 0.934128 |
Target: 5'- --aCUGaaagaaaGACCGCACgCUCGGGGAAUu -3' miRNA: 3'- augGGCg------CUGGUGUG-GAGCCUCUUGu -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 143140 | 0.66 | 0.934128 |
Target: 5'- gGCgCCGCGACC-UGCgUCGGuGAugAc -3' miRNA: 3'- aUG-GGCGCUGGuGUGgAGCCuCUugU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 109889 | 0.66 | 0.907202 |
Target: 5'- --gCCGCGGCCGCG--UCGGGGggUc -3' miRNA: 3'- augGGCGCUGGUGUggAGCCUCuuGu -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 4489 | 0.66 | 0.916983 |
Target: 5'- gACUgGCGAUaagacguucacgugCAUGCCUgCGGAGAACGu -3' miRNA: 3'- aUGGgCGCUG--------------GUGUGGA-GCCUCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 25279 | 0.66 | 0.918643 |
Target: 5'- gGCCUGUcgGGCgUACACCcuacCGGAGGGCAa -3' miRNA: 3'- aUGGGCG--CUG-GUGUGGa---GCCUCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 111543 | 0.66 | 0.924029 |
Target: 5'- gGCCCGgGACgGCACCU-GGcacuucguGAGCGg -3' miRNA: 3'- aUGGGCgCUGgUGUGGAgCCu-------CUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 83200 | 0.66 | 0.928685 |
Target: 5'- gGCCCGCucucgagucccccGugCGCGCCgcCGGgaGGAGCAu -3' miRNA: 3'- aUGGGCG-------------CugGUGUGGa-GCC--UCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 71980 | 0.66 | 0.929191 |
Target: 5'- aGCCCggagGCGACgCAUGCCcUGGAGGugAg -3' miRNA: 3'- aUGGG----CGCUG-GUGUGGaGCCUCUugU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 197134 | 0.66 | 0.934128 |
Target: 5'- -cCCCGacagGACgGCAUCUCGGAcgagGAGCGc -3' miRNA: 3'- auGGGCg---CUGgUGUGGAGCCU----CUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 121603 | 0.66 | 0.913033 |
Target: 5'- gGCCCGgGACC-C-CC-CGGuAGGGCAg -3' miRNA: 3'- aUGGGCgCUGGuGuGGaGCC-UCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 79614 | 0.66 | 0.924029 |
Target: 5'- -cCCCGgGAUCACgucuccaucGCCUCGugcGAGGACGa -3' miRNA: 3'- auGGGCgCUGGUG---------UGGAGC---CUCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 18281 | 0.66 | 0.907202 |
Target: 5'- gACCUGCGAgauCACCUCGucGAGCGg -3' miRNA: 3'- aUGGGCGCUgguGUGGAGCcuCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 182737 | 0.66 | 0.929191 |
Target: 5'- gACgCCGgGGCCACcgacACgUCGGcGAACAg -3' miRNA: 3'- aUG-GGCgCUGGUG----UGgAGCCuCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 62505 | 0.66 | 0.918643 |
Target: 5'- -cCCCGCuACCACagccguACCUUcGAGAGCAu -3' miRNA: 3'- auGGGCGcUGGUG------UGGAGcCUCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 133394 | 0.66 | 0.929191 |
Target: 5'- aGCUCGCGACCGC-CggCGacGAGGACGa -3' miRNA: 3'- aUGGGCGCUGGUGuGgaGC--CUCUUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 164609 | 0.66 | 0.907202 |
Target: 5'- cGCUCGCaggcggggaagaGGCuCGCAgCCUCGGAGgAACAg -3' miRNA: 3'- aUGGGCG------------CUG-GUGU-GGAGCCUC-UUGU- -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 141413 | 0.66 | 0.913033 |
Target: 5'- aGCUgGCGGCCAuCGCCgagcucaUGGAGGGCc -3' miRNA: 3'- aUGGgCGCUGGU-GUGGa------GCCUCUUGu -5' |
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15796 | 3' | -57.2 | NC_004065.1 | + | 81602 | 0.66 | 0.922436 |
Target: 5'- cGCCCagGCGACCAUgcuggccgagacguACUUCGGcguccAGGACAu -3' miRNA: 3'- aUGGG--CGCUGGUG--------------UGGAGCC-----UCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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