miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 122477 1.06 0.005243
Target:  5'- cUACCCGCGACCACACCUCGGAGAACAc -3'
miRNA:   3'- -AUGGGCGCUGGUGUGGAGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 194464 0.77 0.384432
Target:  5'- cGCCUGUGGCCGCcuUCUCGGAGAugGu -3'
miRNA:   3'- aUGGGCGCUGGUGu-GGAGCCUCUugU- -5'
15796 3' -57.2 NC_004065.1 + 109706 0.74 0.497747
Target:  5'- gAUCgCGCGGCgAC-CCUCGGGGGGCAa -3'
miRNA:   3'- aUGG-GCGCUGgUGuGGAGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 104118 0.74 0.507102
Target:  5'- gUGCCgaGCGGCCGgGCCUacagcacggCGGAGAACAa -3'
miRNA:   3'- -AUGGg-CGCUGGUgUGGA---------GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 113721 0.74 0.535591
Target:  5'- --gCCGCcgacGCCgACACCUCGGAGAACu -3'
miRNA:   3'- augGGCGc---UGG-UGUGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 94693 0.74 0.545214
Target:  5'- -uCUCGCGGccCCugACCUUGGAGGGCGg -3'
miRNA:   3'- auGGGCGCU--GGugUGGAGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 126885 0.72 0.653422
Target:  5'- gUGCUaCGCGugCugaACGCCUCGGAcGAGCAc -3'
miRNA:   3'- -AUGG-GCGCugG---UGUGGAGCCU-CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 211681 0.71 0.673163
Target:  5'- aGCCUGCcucgcuuucgaGGCCGCuaccaucuCCUCGGAGAACc -3'
miRNA:   3'- aUGGGCG-----------CUGGUGu-------GGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 135657 0.71 0.673163
Target:  5'- --gCCGCGGCCguaacGCGCgUCGGGGGGCu -3'
miRNA:   3'- augGGCGCUGG-----UGUGgAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 29246 0.71 0.692779
Target:  5'- cGCCCGCcaccGCCGCGCgaCGaGAGAGCGa -3'
miRNA:   3'- aUGGGCGc---UGGUGUGgaGC-CUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 170466 0.7 0.721827
Target:  5'- cUGCCCGUcGCCAUcgGCUUCGGGGggUc -3'
miRNA:   3'- -AUGGGCGcUGGUG--UGGAGCCUCuuGu -5'
15796 3' -57.2 NC_004065.1 + 90101 0.7 0.721827
Target:  5'- gUACCCGUccguucgucGACCgACcCCUCGGGGGAUg -3'
miRNA:   3'- -AUGGGCG---------CUGG-UGuGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 811 0.7 0.721827
Target:  5'- uUGCCaCGU-ACCGCGCUcCGGAGAACGu -3'
miRNA:   3'- -AUGG-GCGcUGGUGUGGaGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 32513 0.7 0.731376
Target:  5'- cGCgCGCGGCCGgGucCCUCGGAGAc-- -3'
miRNA:   3'- aUGgGCGCUGGUgU--GGAGCCUCUugu -5'
15796 3' -57.2 NC_004065.1 + 126120 0.7 0.731376
Target:  5'- --gUCGCGACCucCGCCUCGcGAGAugAu -3'
miRNA:   3'- augGGCGCUGGu-GUGGAGC-CUCUugU- -5'
15796 3' -57.2 NC_004065.1 + 163895 0.69 0.777747
Target:  5'- -gUCCGCGGCCcagcgcgccaGCGCCUCGGuGAu-- -3'
miRNA:   3'- auGGGCGCUGG----------UGUGGAGCCuCUugu -5'
15796 3' -57.2 NC_004065.1 + 114027 0.69 0.777747
Target:  5'- -cCCCGCGG-CGCACgUCGGcGGACGa -3'
miRNA:   3'- auGGGCGCUgGUGUGgAGCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 133994 0.69 0.777747
Target:  5'- gGCCCGUGcCCACGCacgCGG-GGGCGg -3'
miRNA:   3'- aUGGGCGCuGGUGUGga-GCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 32003 0.69 0.786687
Target:  5'- cGCCgGCGACCGCgaccGCCUCcGAGGcCAu -3'
miRNA:   3'- aUGGgCGCUGGUG----UGGAGcCUCUuGU- -5'
15796 3' -57.2 NC_004065.1 + 152240 0.69 0.786687
Target:  5'- cUACUCGCaguucaccGACCAUaACCugUCGGAGGACAu -3'
miRNA:   3'- -AUGGGCG--------CUGGUG-UGG--AGCCUCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.