miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 164609 0.66 0.907202
Target:  5'- cGCUCGCaggcggggaagaGGCuCGCAgCCUCGGAGgAACAg -3'
miRNA:   3'- aUGGGCG------------CUG-GUGU-GGAGCCUC-UUGU- -5'
15796 3' -57.2 NC_004065.1 + 64153 0.67 0.90115
Target:  5'- cUGgCCGcCGACCugGUCUCGGAGuuacGCAa -3'
miRNA:   3'- -AUgGGC-GCUGGugUGGAGCCUCu---UGU- -5'
15796 3' -57.2 NC_004065.1 + 202186 0.67 0.90115
Target:  5'- -cCCCGCGgcaccacggccaGCCAcCACCcCGGGGggUAc -3'
miRNA:   3'- auGGGCGC------------UGGU-GUGGaGCCUCuuGU- -5'
15796 3' -57.2 NC_004065.1 + 131914 0.67 0.90115
Target:  5'- cAUCCGCGACUACACgaCGGGuuccuuGGGCc -3'
miRNA:   3'- aUGGGCGCUGGUGUGgaGCCU------CUUGu -5'
15796 3' -57.2 NC_004065.1 + 149383 0.67 0.90115
Target:  5'- uUGCUCGCGACCGCcgGCCauaUC-GAGGACc -3'
miRNA:   3'- -AUGGGCGCUGGUG--UGG---AGcCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 33714 0.67 0.90115
Target:  5'- cUGCCCGaucACCGCAagUCGGAGcGCAg -3'
miRNA:   3'- -AUGGGCgc-UGGUGUggAGCCUCuUGU- -5'
15796 3' -57.2 NC_004065.1 + 47312 0.67 0.90115
Target:  5'- cGCCCGUgaGGCCGauCCgcggCGGGGGGCAa -3'
miRNA:   3'- aUGGGCG--CUGGUguGGa---GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 152056 0.67 0.89488
Target:  5'- --gCCGCGGCCAgCGUCUCGGGGcucGACGu -3'
miRNA:   3'- augGGCGCUGGU-GUGGAGCCUC---UUGU- -5'
15796 3' -57.2 NC_004065.1 + 3501 0.67 0.892956
Target:  5'- cACCCugcucagagacggaGgGGCCuuCGCCUgGGAGAGCGa -3'
miRNA:   3'- aUGGG--------------CgCUGGu-GUGGAgCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 20631 0.67 0.892956
Target:  5'- -uUCCGCGACCguaucGCcgucuccgucgcagGCCUCGGAGuACGc -3'
miRNA:   3'- auGGGCGCUGG-----UG--------------UGGAGCCUCuUGU- -5'
15796 3' -57.2 NC_004065.1 + 198445 0.67 0.891014
Target:  5'- aGCCCacCGACguCGCCgcguccgcguucgggUCGGAGAACAc -3'
miRNA:   3'- aUGGGc-GCUGguGUGG---------------AGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 212413 0.67 0.888395
Target:  5'- cGCgCCGCGACCACAaaauaUCGGucGAugAg -3'
miRNA:   3'- aUG-GGCGCUGGUGUgg---AGCCu-CUugU- -5'
15796 3' -57.2 NC_004065.1 + 168060 0.67 0.888395
Target:  5'- ----aGCGACgACGuCCUCGGAGAAUu -3'
miRNA:   3'- augggCGCUGgUGU-GGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 127054 0.67 0.888395
Target:  5'- gGCgCCGCGACUACuACCgcgCGGaAGAGa- -3'
miRNA:   3'- aUG-GGCGCUGGUG-UGGa--GCC-UCUUgu -5'
15796 3' -57.2 NC_004065.1 + 113915 0.67 0.881698
Target:  5'- cUACCUccgGCGACCACcCCUcgcCGGAuGAGCu -3'
miRNA:   3'- -AUGGG---CGCUGGUGuGGA---GCCU-CUUGu -5'
15796 3' -57.2 NC_004065.1 + 25445 0.67 0.881698
Target:  5'- cGCCaGCGACUACaACC-CaGAGAGCAg -3'
miRNA:   3'- aUGGgCGCUGGUG-UGGaGcCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 38759 0.67 0.881698
Target:  5'- gUGCCCGCGAguaccguuuCCACACCg-GGcuGACGg -3'
miRNA:   3'- -AUGGGCGCU---------GGUGUGGagCCucUUGU- -5'
15796 3' -57.2 NC_004065.1 + 80463 0.67 0.881698
Target:  5'- gUACCCGaCGAgCGCGagUCGGAcGAGCGc -3'
miRNA:   3'- -AUGGGC-GCUgGUGUggAGCCU-CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 198951 0.67 0.874793
Target:  5'- cGCCCGUGGCCACcaGCCgc-GAGAAg- -3'
miRNA:   3'- aUGGGCGCUGGUG--UGGagcCUCUUgu -5'
15796 3' -57.2 NC_004065.1 + 55842 0.67 0.874793
Target:  5'- -uCCCGCGugUuCcCCUCGaGGGGACAc -3'
miRNA:   3'- auGGGCGCugGuGuGGAGC-CUCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.