miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 49943 0.68 0.867685
Target:  5'- --aCCGCGACCguccggaugACAUCUgcccuugcCGGAGAACGa -3'
miRNA:   3'- augGGCGCUGG---------UGUGGA--------GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 26417 0.68 0.867685
Target:  5'- cGCCacgGCGGCgGCgGCCUCcGAGAGCAc -3'
miRNA:   3'- aUGGg--CGCUGgUG-UGGAGcCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 38556 0.68 0.866963
Target:  5'- cGCgUGCGuggugguGCCGCACCUCGGcgucgAGGACu -3'
miRNA:   3'- aUGgGCGC-------UGGUGUGGAGCC-----UCUUGu -5'
15796 3' -57.2 NC_004065.1 + 208985 0.68 0.860378
Target:  5'- aGCCCGCGGagcauauuaucUCGCACCgcggugaguuguUCGGGGAgACAg -3'
miRNA:   3'- aUGGGCGCU-----------GGUGUGG------------AGCCUCU-UGU- -5'
15796 3' -57.2 NC_004065.1 + 125544 0.68 0.845191
Target:  5'- cACCCugacguUGACCGCAagcCCUUGGAGGACc -3'
miRNA:   3'- aUGGGc-----GCUGGUGU---GGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 89095 0.68 0.845191
Target:  5'- aGCCgGCGuCCugGgCUCGG-GAACGu -3'
miRNA:   3'- aUGGgCGCuGGugUgGAGCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 132970 0.68 0.845191
Target:  5'- cACCauCGCcACCACACCa-GGAGAGCu -3'
miRNA:   3'- aUGG--GCGcUGGUGUGGagCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 80394 0.68 0.845191
Target:  5'- gGCCUGcCGACgGCGCCggugaCGGuGGACGa -3'
miRNA:   3'- aUGGGC-GCUGgUGUGGa----GCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 149711 0.68 0.845191
Target:  5'- gGgCCGCGGCCGCGCCggcccUCGGAcucauAGCGg -3'
miRNA:   3'- aUgGGCGCUGGUGUGG-----AGCCUc----UUGU- -5'
15796 3' -57.2 NC_004065.1 + 110779 0.68 0.845191
Target:  5'- gGCgCGCGGCC-CGuuUCGGAGcGCAc -3'
miRNA:   3'- aUGgGCGCUGGuGUggAGCCUCuUGU- -5'
15796 3' -57.2 NC_004065.1 + 32278 0.68 0.837323
Target:  5'- gUGCCCGCuGuCCGCGuCCUCGGucuccucgucGGAGCc -3'
miRNA:   3'- -AUGGGCG-CuGGUGU-GGAGCC----------UCUUGu -5'
15796 3' -57.2 NC_004065.1 + 35198 0.68 0.837323
Target:  5'- --aCCGaCGACgGuCAUCUCGGAGGACc -3'
miRNA:   3'- augGGC-GCUGgU-GUGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 196824 0.68 0.836526
Target:  5'- cGCCCGCGACCucauguacgacguGCACUUCGGu----- -3'
miRNA:   3'- aUGGGCGCUGG-------------UGUGGAGCCucuugu -5'
15796 3' -57.2 NC_004065.1 + 55114 0.68 0.832517
Target:  5'- cGCCCGCGGCgGCGCCgagacaguuaucuaCGGAaggGAACc -3'
miRNA:   3'- aUGGGCGCUGgUGUGGa-------------GCCU---CUUGu -5'
15796 3' -57.2 NC_004065.1 + 68774 0.68 0.829279
Target:  5'- gUGCUgGCGGCCuucaAgGCCgugUCGGAGAACGu -3'
miRNA:   3'- -AUGGgCGCUGG----UgUGG---AGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 48722 0.68 0.829279
Target:  5'- --gCUGUGACCugACUcUGGAGGACAu -3'
miRNA:   3'- augGGCGCUGGugUGGaGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 60777 0.68 0.829279
Target:  5'- gGgCCGCGGCCuccCGCCUCGc-GAACAu -3'
miRNA:   3'- aUgGGCGCUGGu--GUGGAGCcuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 64881 0.68 0.829279
Target:  5'- --aCCGCGG-CGCGCgUCGGAGAAgAg -3'
miRNA:   3'- augGGCGCUgGUGUGgAGCCUCUUgU- -5'
15796 3' -57.2 NC_004065.1 + 213826 0.68 0.829279
Target:  5'- cGCCCGCaucguggucgaGACCGUAUCUCGGAGcACc -3'
miRNA:   3'- aUGGGCG-----------CUGGUGUGGAGCCUCuUGu -5'
15796 3' -57.2 NC_004065.1 + 195574 0.68 0.829279
Target:  5'- gACCUGCGugCcCACgCUCGGGuGACGg -3'
miRNA:   3'- aUGGGCGCugGuGUG-GAGCCUcUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.