miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 811 0.7 0.721827
Target:  5'- uUGCCaCGU-ACCGCGCUcCGGAGAACGu -3'
miRNA:   3'- -AUGG-GCGcUGGUGUGGaGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 3501 0.67 0.892956
Target:  5'- cACCCugcucagagacggaGgGGCCuuCGCCUgGGAGAGCGa -3'
miRNA:   3'- aUGGG--------------CgCUGGu-GUGGAgCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 4489 0.66 0.916983
Target:  5'- gACUgGCGAUaagacguucacgugCAUGCCUgCGGAGAACGu -3'
miRNA:   3'- aUGGgCGCUG--------------GUGUGGA-GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 18281 0.66 0.907202
Target:  5'- gACCUGCGAgauCACCUCGucGAGCGg -3'
miRNA:   3'- aUGGGCGCUgguGUGGAGCcuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 20631 0.67 0.892956
Target:  5'- -uUCCGCGACCguaucGCcgucuccgucgcagGCCUCGGAGuACGc -3'
miRNA:   3'- auGGGCGCUGG-----UG--------------UGGAGCCUCuUGU- -5'
15796 3' -57.2 NC_004065.1 + 25279 0.66 0.918643
Target:  5'- gGCCUGUcgGGCgUACACCcuacCGGAGGGCAa -3'
miRNA:   3'- aUGGGCG--CUG-GUGUGGa---GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 25445 0.67 0.881698
Target:  5'- cGCCaGCGACUACaACC-CaGAGAGCAg -3'
miRNA:   3'- aUGGgCGCUGGUG-UGGaGcCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 26417 0.68 0.867685
Target:  5'- cGCCacgGCGGCgGCgGCCUCcGAGAGCAc -3'
miRNA:   3'- aUGGg--CGCUGgUG-UGGAGcCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 29246 0.71 0.692779
Target:  5'- cGCCCGCcaccGCCGCGCgaCGaGAGAGCGa -3'
miRNA:   3'- aUGGGCGc---UGGUGUGgaGC-CUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 32003 0.69 0.786687
Target:  5'- cGCCgGCGACCGCgaccGCCUCcGAGGcCAu -3'
miRNA:   3'- aUGGgCGCUGGUG----UGGAGcCUCUuGU- -5'
15796 3' -57.2 NC_004065.1 + 32278 0.68 0.837323
Target:  5'- gUGCCCGCuGuCCGCGuCCUCGGucuccucgucGGAGCc -3'
miRNA:   3'- -AUGGGCG-CuGGUGU-GGAGCC----------UCUUGu -5'
15796 3' -57.2 NC_004065.1 + 32513 0.7 0.731376
Target:  5'- cGCgCGCGGCCGgGucCCUCGGAGAc-- -3'
miRNA:   3'- aUGgGCGCUGGUgU--GGAGCCUCUugu -5'
15796 3' -57.2 NC_004065.1 + 33714 0.67 0.90115
Target:  5'- cUGCCCGaucACCGCAagUCGGAGcGCAg -3'
miRNA:   3'- -AUGGGCgc-UGGUGUggAGCCUCuUGU- -5'
15796 3' -57.2 NC_004065.1 + 35198 0.68 0.837323
Target:  5'- --aCCGaCGACgGuCAUCUCGGAGGACc -3'
miRNA:   3'- augGGC-GCUGgU-GUGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 37880 0.66 0.929191
Target:  5'- gAUCgGCacgauguuCCGCACCUCGGAcGAGCu -3'
miRNA:   3'- aUGGgCGcu------GGUGUGGAGCCU-CUUGu -5'
15796 3' -57.2 NC_004065.1 + 38556 0.68 0.866963
Target:  5'- cGCgUGCGuggugguGCCGCACCUCGGcgucgAGGACu -3'
miRNA:   3'- aUGgGCGC-------UGGUGUGGAGCC-----UCUUGu -5'
15796 3' -57.2 NC_004065.1 + 38759 0.67 0.881698
Target:  5'- gUGCCCGCGAguaccguuuCCACACCg-GGcuGACGg -3'
miRNA:   3'- -AUGGGCGCU---------GGUGUGGagCCucUUGU- -5'
15796 3' -57.2 NC_004065.1 + 47312 0.67 0.90115
Target:  5'- cGCCCGUgaGGCCGauCCgcggCGGGGGGCAa -3'
miRNA:   3'- aUGGGCG--CUGGUguGGa---GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 48722 0.68 0.829279
Target:  5'- --gCUGUGACCugACUcUGGAGGACAu -3'
miRNA:   3'- augGGCGCUGGugUGGaGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 49943 0.68 0.867685
Target:  5'- --aCCGCGACCguccggaugACAUCUgcccuugcCGGAGAACGa -3'
miRNA:   3'- augGGCGCUGG---------UGUGGA--------GCCUCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.