miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 55114 0.68 0.832517
Target:  5'- cGCCCGCGGCgGCGCCgagacaguuaucuaCGGAaggGAACc -3'
miRNA:   3'- aUGGGCGCUGgUGUGGa-------------GCCU---CUUGu -5'
15796 3' -57.2 NC_004065.1 + 55842 0.67 0.874793
Target:  5'- -uCCCGCGugUuCcCCUCGaGGGGACAc -3'
miRNA:   3'- auGGGCGCugGuGuGGAGC-CUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 57631 0.66 0.934128
Target:  5'- --aCUGaaagaaaGACCGCACgCUCGGGGAAUu -3'
miRNA:   3'- augGGCg------CUGGUGUG-GAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 60777 0.68 0.829279
Target:  5'- gGgCCGCGGCCuccCGCCUCGc-GAACAu -3'
miRNA:   3'- aUgGGCGCUGGu--GUGGAGCcuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 62505 0.66 0.918643
Target:  5'- -cCCCGCuACCACagccguACCUUcGAGAGCAu -3'
miRNA:   3'- auGGGCGcUGGUG------UGGAGcCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 64153 0.67 0.90115
Target:  5'- cUGgCCGcCGACCugGUCUCGGAGuuacGCAa -3'
miRNA:   3'- -AUgGGC-GCUGGugUGGAGCCUCu---UGU- -5'
15796 3' -57.2 NC_004065.1 + 64881 0.68 0.829279
Target:  5'- --aCCGCGG-CGCGCgUCGGAGAAgAg -3'
miRNA:   3'- augGGCGCUgGUGUGgAGCCUCUUgU- -5'
15796 3' -57.2 NC_004065.1 + 68774 0.68 0.829279
Target:  5'- gUGCUgGCGGCCuucaAgGCCgugUCGGAGAACGu -3'
miRNA:   3'- -AUGGgCGCUGG----UgUGG---AGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 71980 0.66 0.929191
Target:  5'- aGCCCggagGCGACgCAUGCCcUGGAGGugAg -3'
miRNA:   3'- aUGGG----CGCUG-GUGUGGaGCCUCUugU- -5'
15796 3' -57.2 NC_004065.1 + 79614 0.66 0.924029
Target:  5'- -cCCCGgGAUCACgucuccaucGCCUCGugcGAGGACGa -3'
miRNA:   3'- auGGGCgCUGGUG---------UGGAGC---CUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 80394 0.68 0.845191
Target:  5'- gGCCUGcCGACgGCGCCggugaCGGuGGACGa -3'
miRNA:   3'- aUGGGC-GCUGgUGUGGa----GCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 80463 0.67 0.881698
Target:  5'- gUACCCGaCGAgCGCGagUCGGAcGAGCGc -3'
miRNA:   3'- -AUGGGC-GCUgGUGUggAGCCU-CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 81602 0.66 0.922436
Target:  5'- cGCCCagGCGACCAUgcuggccgagacguACUUCGGcguccAGGACAu -3'
miRNA:   3'- aUGGG--CGCUGGUG--------------UGGAGCC-----UCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 83200 0.66 0.928685
Target:  5'- gGCCCGCucucgagucccccGugCGCGCCgcCGGgaGGAGCAu -3'
miRNA:   3'- aUGGGCG-------------CugGUGUGGa-GCC--UCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 89095 0.68 0.845191
Target:  5'- aGCCgGCGuCCugGgCUCGG-GAACGu -3'
miRNA:   3'- aUGGgCGCuGGugUgGAGCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 90101 0.7 0.721827
Target:  5'- gUACCCGUccguucgucGACCgACcCCUCGGGGGAUg -3'
miRNA:   3'- -AUGGGCG---------CUGG-UGuGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 94693 0.74 0.545214
Target:  5'- -uCUCGCGGccCCugACCUUGGAGGGCGg -3'
miRNA:   3'- auGGGCGCU--GGugUGGAGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 104118 0.74 0.507102
Target:  5'- gUGCCgaGCGGCCGgGCCUacagcacggCGGAGAACAa -3'
miRNA:   3'- -AUGGg-CGCUGGUgUGGA---------GCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 109196 0.69 0.795497
Target:  5'- gGCCgGCGGCgGCGCCUCGGc----- -3'
miRNA:   3'- aUGGgCGCUGgUGUGGAGCCucuugu -5'
15796 3' -57.2 NC_004065.1 + 109706 0.74 0.497747
Target:  5'- gAUCgCGCGGCgAC-CCUCGGGGGGCAa -3'
miRNA:   3'- aUGG-GCGCUGgUGuGGAGCCUCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.