miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 222820 0.66 0.933645
Target:  5'- gGCCCgagaagccgcuagGCGGCCACAgCUCGGucgucauuGACAg -3'
miRNA:   3'- aUGGG-------------CGCUGGUGUgGAGCCuc------UUGU- -5'
15796 3' -57.2 NC_004065.1 + 213826 0.68 0.829279
Target:  5'- cGCCCGCaucguggucgaGACCGUAUCUCGGAGcACc -3'
miRNA:   3'- aUGGGCG-----------CUGGUGUGGAGCCUCuUGu -5'
15796 3' -57.2 NC_004065.1 + 212413 0.67 0.888395
Target:  5'- cGCgCCGCGACCACAaaauaUCGGucGAugAg -3'
miRNA:   3'- aUG-GGCGCUGGUGUgg---AGCCu-CUugU- -5'
15796 3' -57.2 NC_004065.1 + 211681 0.71 0.673163
Target:  5'- aGCCUGCcucgcuuucgaGGCCGCuaccaucuCCUCGGAGAACc -3'
miRNA:   3'- aUGGGCG-----------CUGGUGu-------GGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 208985 0.68 0.860378
Target:  5'- aGCCCGCGGagcauauuaucUCGCACCgcggugaguuguUCGGGGAgACAg -3'
miRNA:   3'- aUGGGCGCU-----------GGUGUGG------------AGCCUCU-UGU- -5'
15796 3' -57.2 NC_004065.1 + 202186 0.67 0.90115
Target:  5'- -cCCCGCGgcaccacggccaGCCAcCACCcCGGGGggUAc -3'
miRNA:   3'- auGGGCGC------------UGGU-GUGGaGCCUCuuGU- -5'
15796 3' -57.2 NC_004065.1 + 199260 0.69 0.812695
Target:  5'- -gUCCGCGuCCGCcgACCUCGGAuuccgaGGGCAg -3'
miRNA:   3'- auGGGCGCuGGUG--UGGAGCCU------CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 198951 0.67 0.874793
Target:  5'- cGCCCGUGGCCACcaGCCgc-GAGAAg- -3'
miRNA:   3'- aUGGGCGCUGGUG--UGGagcCUCUUgu -5'
15796 3' -57.2 NC_004065.1 + 198445 0.67 0.891014
Target:  5'- aGCCCacCGACguCGCCgcguccgcguucgggUCGGAGAACAc -3'
miRNA:   3'- aUGGGc-GCUGguGUGG---------------AGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 197134 0.66 0.934128
Target:  5'- -cCCCGacagGACgGCAUCUCGGAcgagGAGCGc -3'
miRNA:   3'- auGGGCg---CUGgUGUGGAGCCU----CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 196824 0.68 0.836526
Target:  5'- cGCCCGCGACCucauguacgacguGCACUUCGGu----- -3'
miRNA:   3'- aUGGGCGCUGG-------------UGUGGAGCCucuugu -5'
15796 3' -57.2 NC_004065.1 + 195574 0.68 0.829279
Target:  5'- gACCUGCGugCcCACgCUCGGGuGACGg -3'
miRNA:   3'- aUGGGCGCugGuGUG-GAGCCUcUUGU- -5'
15796 3' -57.2 NC_004065.1 + 194464 0.77 0.384432
Target:  5'- cGCCUGUGGCCGCcuUCUCGGAGAugGu -3'
miRNA:   3'- aUGGGCGCUGGUGu-GGAGCCUCUugU- -5'
15796 3' -57.2 NC_004065.1 + 191278 0.69 0.795497
Target:  5'- gUACUCGCGGgCACGCC--GGAGAugAa -3'
miRNA:   3'- -AUGGGCGCUgGUGUGGagCCUCUugU- -5'
15796 3' -57.2 NC_004065.1 + 182868 0.69 0.81185
Target:  5'- cGCCCGUuucGCCACGCCuucgcccacgagcUCGGAGAccgACGg -3'
miRNA:   3'- aUGGGCGc--UGGUGUGG-------------AGCCUCU---UGU- -5'
15796 3' -57.2 NC_004065.1 + 182737 0.66 0.929191
Target:  5'- gACgCCGgGGCCACcgacACgUCGGcGAACAg -3'
miRNA:   3'- aUG-GGCgCUGGUG----UGgAGCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 179592 0.69 0.820238
Target:  5'- cGCCacgcgugUGCGACCGCGCCUCGaGcGAugGu -3'
miRNA:   3'- aUGG-------GCGCUGGUGUGGAGC-CuCUugU- -5'
15796 3' -57.2 NC_004065.1 + 170466 0.7 0.721827
Target:  5'- cUGCCCGUcGCCAUcgGCUUCGGGGggUc -3'
miRNA:   3'- -AUGGGCGcUGGUG--UGGAGCCUCuuGu -5'
15796 3' -57.2 NC_004065.1 + 168060 0.67 0.888395
Target:  5'- ----aGCGACgACGuCCUCGGAGAAUu -3'
miRNA:   3'- augggCGCUGgUGU-GGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 166177 0.69 0.803309
Target:  5'- gUGCaCCGCGAugugucugagcauCCACugC-CGGAGAGCc -3'
miRNA:   3'- -AUG-GGCGCU-------------GGUGugGaGCCUCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.