miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 3' -57.2 NC_004065.1 + 208985 0.68 0.860378
Target:  5'- aGCCCGCGGagcauauuaucUCGCACCgcggugaguuguUCGGGGAgACAg -3'
miRNA:   3'- aUGGGCGCU-----------GGUGUGG------------AGCCUCU-UGU- -5'
15796 3' -57.2 NC_004065.1 + 60777 0.68 0.829279
Target:  5'- gGgCCGCGGCCuccCGCCUCGc-GAACAu -3'
miRNA:   3'- aUgGGCGCUGGu--GUGGAGCcuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 64881 0.68 0.829279
Target:  5'- --aCCGCGG-CGCGCgUCGGAGAAgAg -3'
miRNA:   3'- augGGCGCUgGUGUGgAGCCUCUUgU- -5'
15796 3' -57.2 NC_004065.1 + 213826 0.68 0.829279
Target:  5'- cGCCCGCaucguggucgaGACCGUAUCUCGGAGcACc -3'
miRNA:   3'- aUGGGCG-----------CUGGUGUGGAGCCUCuUGu -5'
15796 3' -57.2 NC_004065.1 + 55114 0.68 0.832517
Target:  5'- cGCCCGCGGCgGCGCCgagacaguuaucuaCGGAaggGAACc -3'
miRNA:   3'- aUGGGCGCUGgUGUGGa-------------GCCU---CUUGu -5'
15796 3' -57.2 NC_004065.1 + 32278 0.68 0.837323
Target:  5'- gUGCCCGCuGuCCGCGuCCUCGGucuccucgucGGAGCc -3'
miRNA:   3'- -AUGGGCG-CuGGUGU-GGAGCC----------UCUUGu -5'
15796 3' -57.2 NC_004065.1 + 35198 0.68 0.837323
Target:  5'- --aCCGaCGACgGuCAUCUCGGAGGACc -3'
miRNA:   3'- augGGC-GCUGgU-GUGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 110779 0.68 0.845191
Target:  5'- gGCgCGCGGCC-CGuuUCGGAGcGCAc -3'
miRNA:   3'- aUGgGCGCUGGuGUggAGCCUCuUGU- -5'
15796 3' -57.2 NC_004065.1 + 149711 0.68 0.845191
Target:  5'- gGgCCGCGGCCGCGCCggcccUCGGAcucauAGCGg -3'
miRNA:   3'- aUgGGCGCUGGUGUGG-----AGCCUc----UUGU- -5'
15796 3' -57.2 NC_004065.1 + 68774 0.68 0.829279
Target:  5'- gUGCUgGCGGCCuucaAgGCCgugUCGGAGAACGu -3'
miRNA:   3'- -AUGGgCGCUGG----UgUGG---AGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 122353 0.69 0.821068
Target:  5'- -uUCCGCacguaGGCCAgcguCACCUCGGAGGAgAg -3'
miRNA:   3'- auGGGCG-----CUGGU----GUGGAGCCUCUUgU- -5'
15796 3' -57.2 NC_004065.1 + 199260 0.69 0.812695
Target:  5'- -gUCCGCGuCCGCcgACCUCGGAuuccgaGGGCAg -3'
miRNA:   3'- auGGGCGCuGGUG--UGGAGCCU------CUUGU- -5'
15796 3' -57.2 NC_004065.1 + 113721 0.74 0.535591
Target:  5'- --gCCGCcgacGCCgACACCUCGGAGAACu -3'
miRNA:   3'- augGGCGc---UGG-UGUGGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 135657 0.71 0.673163
Target:  5'- --gCCGCGGCCguaacGCGCgUCGGGGGGCu -3'
miRNA:   3'- augGGCGCUGG-----UGUGgAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 211681 0.71 0.673163
Target:  5'- aGCCUGCcucgcuuucgaGGCCGCuaccaucuCCUCGGAGAACc -3'
miRNA:   3'- aUGGGCG-----------CUGGUGu-------GGAGCCUCUUGu -5'
15796 3' -57.2 NC_004065.1 + 133994 0.69 0.777747
Target:  5'- gGCCCGUGcCCACGCacgCGG-GGGCGg -3'
miRNA:   3'- aUGGGCGCuGGUGUGga-GCCuCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 152240 0.69 0.786687
Target:  5'- cUACUCGCaguucaccGACCAUaACCugUCGGAGGACAu -3'
miRNA:   3'- -AUGGGCG--------CUGGUG-UGG--AGCCUCUUGU- -5'
15796 3' -57.2 NC_004065.1 + 32003 0.69 0.786687
Target:  5'- cGCCgGCGACCGCgaccGCCUCcGAGGcCAu -3'
miRNA:   3'- aUGGgCGCUGGUG----UGGAGcCUCUuGU- -5'
15796 3' -57.2 NC_004065.1 + 109196 0.69 0.795497
Target:  5'- gGCCgGCGGCgGCGCCUCGGc----- -3'
miRNA:   3'- aUGGgCGCUGgUGUGGAGCCucuugu -5'
15796 3' -57.2 NC_004065.1 + 166177 0.69 0.803309
Target:  5'- gUGCaCCGCGAugugucugagcauCCACugC-CGGAGAGCc -3'
miRNA:   3'- -AUG-GGCGCU-------------GGUGugGaGCCUCUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.