miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15796 5' -51.8 NC_004065.1 + 171063 0.66 0.998129
Target:  5'- cGUUCUcguUCuGGAucGACGUGuuGGAGGUcGGc -3'
miRNA:   3'- -CAAGA---AG-CCU--CUGCACucUCUCCA-CC- -5'
15796 5' -51.8 NC_004065.1 + 80077 0.66 0.998129
Target:  5'- -cUCUUgGGAgagGACGgagGAGAG-GGUGa -3'
miRNA:   3'- caAGAAgCCU---CUGCa--CUCUCuCCACc -5'
15796 5' -51.8 NC_004065.1 + 638 0.66 0.998129
Target:  5'- -cUCUUCGGAccccGGgGUG-GGGGGGcGGg -3'
miRNA:   3'- caAGAAGCCU----CUgCACuCUCUCCaCC- -5'
15796 5' -51.8 NC_004065.1 + 62507 0.66 0.99778
Target:  5'- -gUCUUCGGcauucgGGugG-GAGGGAGGg-- -3'
miRNA:   3'- caAGAAGCC------UCugCaCUCUCUCCacc -5'
15796 5' -51.8 NC_004065.1 + 35514 0.66 0.997379
Target:  5'- -gUCUU-GGAGGCGac--GGAGGUGGg -3'
miRNA:   3'- caAGAAgCCUCUGCacucUCUCCACC- -5'
15796 5' -51.8 NC_004065.1 + 141182 0.66 0.996918
Target:  5'- aGUUCggacagaUCGGGuacuACGUGGGgucGGGGGUGGa -3'
miRNA:   3'- -CAAGa------AGCCUc---UGCACUC---UCUCCACC- -5'
15796 5' -51.8 NC_004065.1 + 148605 0.67 0.994361
Target:  5'- aGUUCUccgcCGGGGACGaggGAcGGGcccGGGUGGg -3'
miRNA:   3'- -CAAGAa---GCCUCUGCa--CU-CUC---UCCACC- -5'
15796 5' -51.8 NC_004065.1 + 22156 0.67 0.994361
Target:  5'- --cCUUCGacguGACgGUGAGGGGcGGUGGg -3'
miRNA:   3'- caaGAAGCcu--CUG-CACUCUCU-CCACC- -5'
15796 5' -51.8 NC_004065.1 + 225891 0.67 0.993507
Target:  5'- -gUCUUCGG-GuC-UGAGGGAcGGUGGu -3'
miRNA:   3'- caAGAAGCCuCuGcACUCUCU-CCACC- -5'
15796 5' -51.8 NC_004065.1 + 109104 0.67 0.992553
Target:  5'- aUUCUgggCGGAGGagagGGGAcgGAGGUGGc -3'
miRNA:   3'- cAAGAa--GCCUCUgca-CUCU--CUCCACC- -5'
15796 5' -51.8 NC_004065.1 + 148154 0.68 0.990312
Target:  5'- aUUCUUCuuAGugGUGGGAGGaguagugauGGUGGu -3'
miRNA:   3'- cAAGAAGccUCugCACUCUCU---------CCACC- -5'
15796 5' -51.8 NC_004065.1 + 136754 0.68 0.989009
Target:  5'- gGUUUcgCGGGGgauGCGggGGGAGAGcGUGGg -3'
miRNA:   3'- -CAAGaaGCCUC---UGCa-CUCUCUC-CACC- -5'
15796 5' -51.8 NC_004065.1 + 136837 0.68 0.989009
Target:  5'- -gUUUggGGGGGgGUGAGuuGGGGUGGa -3'
miRNA:   3'- caAGAagCCUCUgCACUCu-CUCCACC- -5'
15796 5' -51.8 NC_004065.1 + 163348 0.68 0.989009
Target:  5'- -cUCUUgGGGGGgcUGUGGGGGGcccGGUGGc -3'
miRNA:   3'- caAGAAgCCUCU--GCACUCUCU---CCACC- -5'
15796 5' -51.8 NC_004065.1 + 102618 0.68 0.987573
Target:  5'- -gUCgaCGGuGACGgccUGGGAGAGGcGGg -3'
miRNA:   3'- caAGaaGCCuCUGC---ACUCUCUCCaCC- -5'
15796 5' -51.8 NC_004065.1 + 166148 0.68 0.987573
Target:  5'- ----cUCGGGuGACGUGcGGGuGGUGGu -3'
miRNA:   3'- caagaAGCCU-CUGCACuCUCuCCACC- -5'
15796 5' -51.8 NC_004065.1 + 198899 0.68 0.985996
Target:  5'- ----gUCGGAGACG-GAGAcgguGAcGGUGGu -3'
miRNA:   3'- caagaAGCCUCUGCaCUCU----CU-CCACC- -5'
15796 5' -51.8 NC_004065.1 + 15216 0.69 0.982389
Target:  5'- uUUCUcgaacacgCGGAuGAUGUGAGAGAGcGUuGGa -3'
miRNA:   3'- cAAGAa-------GCCU-CUGCACUCUCUC-CA-CC- -5'
15796 5' -51.8 NC_004065.1 + 173299 0.7 0.971495
Target:  5'- gGUUCUucuucgaggugucggUCGGcGACGaGGGuGAGGUGGc -3'
miRNA:   3'- -CAAGA---------------AGCCuCUGCaCUCuCUCCACC- -5'
15796 5' -51.8 NC_004065.1 + 19756 0.71 0.953352
Target:  5'- -----aCGGGGGCGUGcGGGGGuGUGGg -3'
miRNA:   3'- caagaaGCCUCUGCACuCUCUC-CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.