Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15796 | 5' | -51.8 | NC_004065.1 | + | 638 | 0.66 | 0.998129 |
Target: 5'- -cUCUUCGGAccccGGgGUG-GGGGGGcGGg -3' miRNA: 3'- caAGAAGCCU----CUgCACuCUCUCCaCC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 6371 | 0.75 | 0.785089 |
Target: 5'- -aUCUgggugaCGGGGGuagUGUGGGAGGGGUGGa -3' miRNA: 3'- caAGAa-----GCCUCU---GCACUCUCUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 15216 | 0.69 | 0.982389 |
Target: 5'- uUUCUcgaacacgCGGAuGAUGUGAGAGAGcGUuGGa -3' miRNA: 3'- cAAGAa-------GCCU-CUGCACUCUCUC-CA-CC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 19756 | 0.71 | 0.953352 |
Target: 5'- -----aCGGGGGCGUGcGGGGGuGUGGg -3' miRNA: 3'- caagaaGCCUCUGCACuCUCUC-CACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 22156 | 0.67 | 0.994361 |
Target: 5'- --cCUUCGacguGACgGUGAGGGGcGGUGGg -3' miRNA: 3'- caaGAAGCcu--CUG-CACUCUCU-CCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 35514 | 0.66 | 0.997379 |
Target: 5'- -gUCUU-GGAGGCGac--GGAGGUGGg -3' miRNA: 3'- caAGAAgCCUCUGCacucUCUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 58890 | 0.71 | 0.945006 |
Target: 5'- gGUUCUUgaCGGucuGGACGaUGAGcgcGGGGGUGGg -3' miRNA: 3'- -CAAGAA--GCC---UCUGC-ACUC---UCUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 62507 | 0.66 | 0.99778 |
Target: 5'- -gUCUUCGGcauucgGGugG-GAGGGAGGg-- -3' miRNA: 3'- caAGAAGCC------UCugCaCUCUCUCCacc -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 77439 | 0.76 | 0.757163 |
Target: 5'- -aUCUcCGGGGugGUGAGGGGGGa-- -3' miRNA: 3'- caAGAaGCCUCugCACUCUCUCCacc -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 80077 | 0.66 | 0.998129 |
Target: 5'- -cUCUUgGGAgagGACGgagGAGAG-GGUGa -3' miRNA: 3'- caAGAAgCCU---CUGCa--CUCUCuCCACc -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 102618 | 0.68 | 0.987573 |
Target: 5'- -gUCgaCGGuGACGgccUGGGAGAGGcGGg -3' miRNA: 3'- caAGaaGCCuCUGC---ACUCUCUCCaCC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 109104 | 0.67 | 0.992553 |
Target: 5'- aUUCUgggCGGAGGagagGGGAcgGAGGUGGc -3' miRNA: 3'- cAAGAa--GCCUCUgca-CUCU--CUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 122513 | 1.11 | 0.009029 |
Target: 5'- uGUUCUUCGGAGACGUGAGAGAGGUGGa -3' miRNA: 3'- -CAAGAAGCCUCUGCACUCUCUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 136754 | 0.68 | 0.989009 |
Target: 5'- gGUUUcgCGGGGgauGCGggGGGAGAGcGUGGg -3' miRNA: 3'- -CAAGaaGCCUC---UGCa-CUCUCUC-CACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 136837 | 0.68 | 0.989009 |
Target: 5'- -gUUUggGGGGGgGUGAGuuGGGGUGGa -3' miRNA: 3'- caAGAagCCUCUgCACUCu-CUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 141182 | 0.66 | 0.996918 |
Target: 5'- aGUUCggacagaUCGGGuacuACGUGGGgucGGGGGUGGa -3' miRNA: 3'- -CAAGa------AGCCUc---UGCACUC---UCUCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 148154 | 0.68 | 0.990312 |
Target: 5'- aUUCUUCuuAGugGUGGGAGGaguagugauGGUGGu -3' miRNA: 3'- cAAGAAGccUCugCACUCUCU---------CCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 148605 | 0.67 | 0.994361 |
Target: 5'- aGUUCUccgcCGGGGACGaggGAcGGGcccGGGUGGg -3' miRNA: 3'- -CAAGAa---GCCUCUGCa--CU-CUC---UCCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 163348 | 0.68 | 0.989009 |
Target: 5'- -cUCUUgGGGGGgcUGUGGGGGGcccGGUGGc -3' miRNA: 3'- caAGAAgCCUCU--GCACUCUCU---CCACC- -5' |
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15796 | 5' | -51.8 | NC_004065.1 | + | 166148 | 0.68 | 0.987573 |
Target: 5'- ----cUCGGGuGACGUGcGGGuGGUGGu -3' miRNA: 3'- caagaAGCCU-CUGCACuCUCuCCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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