Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15798 | 3' | -58.8 | NC_004065.1 | + | 88494 | 0.66 | 0.842909 |
Target: 5'- cGCGUCCucgGAGGuGCUCCUGaccuuGAG-Cu -3' miRNA: 3'- -UGCGGGua-CUCCuCGAGGACg----CUCuG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 142854 | 0.66 | 0.842909 |
Target: 5'- cCGCgCgGUGcAGGGGCUCCUG-GAcGACc -3' miRNA: 3'- uGCG-GgUAC-UCCUCGAGGACgCU-CUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 29726 | 0.66 | 0.846018 |
Target: 5'- cCGCCCAggacgaUGAGauccuccggacagcaGAGguaCUCCUGCGAGAg -3' miRNA: 3'- uGCGGGU------ACUC---------------CUC---GAGGACGCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 109629 | 0.66 | 0.850628 |
Target: 5'- gUGCCCAccaccgucGAGG-GCgUCCUGCGcGACu -3' miRNA: 3'- uGCGGGUa-------CUCCuCG-AGGACGCuCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 25658 | 0.66 | 0.850628 |
Target: 5'- aAC-CCgAUGAcGGAgaacuGCUCCgGCGAGGCg -3' miRNA: 3'- -UGcGGgUACU-CCU-----CGAGGaCGCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 70514 | 0.66 | 0.858163 |
Target: 5'- gGCGCCCuucucGAcGGAGCUgcaggcgcgCCUGC-AGGCg -3' miRNA: 3'- -UGCGGGua---CU-CCUCGA---------GGACGcUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 177153 | 0.66 | 0.858163 |
Target: 5'- uGCGCCUcgaucgGAGGAGCgUCCUGgccaGAGuCu -3' miRNA: 3'- -UGCGGGua----CUCCUCG-AGGACg---CUCuG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 209961 | 0.66 | 0.858163 |
Target: 5'- -gGCCCGacGGGcGGCUCgaGCGAGAg -3' miRNA: 3'- ugCGGGUacUCC-UCGAGgaCGCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 201524 | 0.66 | 0.865507 |
Target: 5'- -aGuCCCAUGcgacGGAGCUCCgcgGCGcugucggccAGACg -3' miRNA: 3'- ugC-GGGUACu---CCUCGAGGa--CGC---------UCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 119333 | 0.66 | 0.872656 |
Target: 5'- uCGCCC-UGGGcAGCUCCa--GAGACa -3' miRNA: 3'- uGCGGGuACUCcUCGAGGacgCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 33668 | 0.66 | 0.865507 |
Target: 5'- gGCGCgCGggGAGG-GC-CgCUGCGAGAUg -3' miRNA: 3'- -UGCGgGUa-CUCCuCGaG-GACGCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 173168 | 0.66 | 0.842909 |
Target: 5'- -gGCCCGUGGGaGGGCcgUCgUGCGAuuuucGGCa -3' miRNA: 3'- ugCGGGUACUC-CUCG--AGgACGCU-----CUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 155542 | 0.66 | 0.850628 |
Target: 5'- --cCCCGUGuGGuGCUUCUGCaAGACc -3' miRNA: 3'- ugcGGGUACuCCuCGAGGACGcUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 4667 | 0.66 | 0.842909 |
Target: 5'- gGCGUCCAgagacaGAGGA-CUCCgGCGgcGGACa -3' miRNA: 3'- -UGCGGGUa-----CUCCUcGAGGaCGC--UCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 3505 | 0.66 | 0.850628 |
Target: 5'- cUGCUCAgagacgGAGGGGCcuucgCCUGgGAGAg -3' miRNA: 3'- uGCGGGUa-----CUCCUCGa----GGACgCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 197368 | 0.67 | 0.810314 |
Target: 5'- cGCGCCCGcGAGGAacucCUCCUGCa---- -3' miRNA: 3'- -UGCGGGUaCUCCUc---GAGGACGcucug -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 14978 | 0.67 | 0.835011 |
Target: 5'- cACGUaccugcagaCCGUGAgGGAGCUCgUGgGuGACg -3' miRNA: 3'- -UGCG---------GGUACU-CCUCGAGgACgCuCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 210166 | 0.67 | 0.792207 |
Target: 5'- cACGUCCAUGAagaagauGGAGUacUCC-GCgGAGACg -3' miRNA: 3'- -UGCGGGUACU-------CCUCG--AGGaCG-CUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 67007 | 0.67 | 0.818706 |
Target: 5'- gGCGCCCGUGuacGGGC-CCcGCGcGGGCa -3' miRNA: 3'- -UGCGGGUACuc-CUCGaGGaCGC-UCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 75363 | 0.67 | 0.835011 |
Target: 5'- gUGCCCGaGAGGAGCagCUG-GAGGu -3' miRNA: 3'- uGCGGGUaCUCCUCGagGACgCUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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