Results 41 - 42 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15798 | 3' | -58.8 | NC_004065.1 | + | 142854 | 0.66 | 0.842909 |
Target: 5'- cCGCgCgGUGcAGGGGCUCCUG-GAcGACc -3' miRNA: 3'- uGCG-GgUAC-UCCUCGAGGACgCU-CUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 33668 | 0.66 | 0.865507 |
Target: 5'- gGCGCgCGggGAGG-GC-CgCUGCGAGAUg -3' miRNA: 3'- -UGCGgGUa-CUCCuCGaG-GACGCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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