miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15798 3' -58.8 NC_004065.1 + 120539 1.09 0.002069
Target:  5'- gACGCCCAUGAGGAGCUCCUGCGAGACg -3'
miRNA:   3'- -UGCGGGUACUCCUCGAGGACGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 128368 0.74 0.433191
Target:  5'- uGCGCCCAUc-GGGGCUUCggcgGCGAGAg -3'
miRNA:   3'- -UGCGGGUAcuCCUCGAGGa---CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 138700 0.73 0.495994
Target:  5'- aACGgCCucaAGGAGCUCCUcuaGCGGGGCa -3'
miRNA:   3'- -UGCgGGuacUCCUCGAGGA---CGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 91318 0.72 0.552903
Target:  5'- cUGCCCcgcGUaGAGGAGCUCCU-UGAGGCc -3'
miRNA:   3'- uGCGGG---UA-CUCCUCGAGGAcGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 53042 0.71 0.582106
Target:  5'- aGCGCCC-UGAGGAGCgucgCUggucGgGGGACu -3'
miRNA:   3'- -UGCGGGuACUCCUCGa---GGa---CgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 108667 0.7 0.640252
Target:  5'- gGCGCCCGUGcGGAuGgaCCUGCugugcgugcagagGAGACu -3'
miRNA:   3'- -UGCGGGUACuCCU-CgaGGACG-------------CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 205861 0.7 0.64124
Target:  5'- aGCGCCUGUGAcGAGUUCUUcGUGGGAUa -3'
miRNA:   3'- -UGCGGGUACUcCUCGAGGA-CGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 47311 0.7 0.67081
Target:  5'- uCGCCCGUGAGGccgaUCCgcgGCGGGGg -3'
miRNA:   3'- uGCGGGUACUCCucg-AGGa--CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 115311 0.69 0.71364
Target:  5'- cCGCCUauuccucucuccccuGUaGAGGGGCUgCUGCuGAGGCg -3'
miRNA:   3'- uGCGGG---------------UA-CUCCUCGAgGACG-CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 53918 0.68 0.744977
Target:  5'- aGCGCCCGUcAGGAuaccgcuugcggcgGCUUCU-CGAGGCa -3'
miRNA:   3'- -UGCGGGUAcUCCU--------------CGAGGAcGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 187196 0.68 0.747781
Target:  5'- uCGCCCcgGAgGGGGUUCCcccgaUGUGAGGg -3'
miRNA:   3'- uGCGGGuaCU-CCUCGAGG-----ACGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 169969 0.68 0.747781
Target:  5'- cGCGUCgCAUGAccaaGGAGUUCCU-CGAGAa -3'
miRNA:   3'- -UGCGG-GUACU----CCUCGAGGAcGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 179531 0.68 0.747781
Target:  5'- gACGCCCAacUGuGGGGa-CCUGCGGuGAUg -3'
miRNA:   3'- -UGCGGGU--ACuCCUCgaGGACGCU-CUG- -5'
15798 3' -58.8 NC_004065.1 + 192953 0.68 0.757064
Target:  5'- uGCGCUCucGGGGGGUuucugcauUCUUGUGAGACg -3'
miRNA:   3'- -UGCGGGuaCUCCUCG--------AGGACGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 7297 0.68 0.766244
Target:  5'- -gGuCCCGggcGAGGAGCUCCUGaCGAu-- -3'
miRNA:   3'- ugC-GGGUa--CUCCUCGAGGAC-GCUcug -5'
15798 3' -58.8 NC_004065.1 + 184911 0.68 0.775312
Target:  5'- gGCGCCCggGUGgcucGGGAGCggCC-GgGAGACg -3'
miRNA:   3'- -UGCGGG--UAC----UCCUCGa-GGaCgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 210166 0.67 0.792207
Target:  5'- cACGUCCAUGAagaagauGGAGUacUCC-GCgGAGACg -3'
miRNA:   3'- -UGCGGGUACU-------CCUCG--AGGaCG-CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 193955 0.67 0.793083
Target:  5'- aACGCCgcuccucuguuCGUGAGGAGUgucCCUaucgGCGAGAa -3'
miRNA:   3'- -UGCGG-----------GUACUCCUCGa--GGA----CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 197368 0.67 0.810314
Target:  5'- cGCGCCCGcGAGGAacucCUCCUGCa---- -3'
miRNA:   3'- -UGCGGGUaCUCCUc---GAGGACGcucug -5'
15798 3' -58.8 NC_004065.1 + 197651 0.67 0.813689
Target:  5'- gACGCUCAUGAuGGAGCuggauagguuauacgUCCccaaGCGGGAg -3'
miRNA:   3'- -UGCGGGUACU-CCUCG---------------AGGa---CGCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.