miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15798 3' -58.8 NC_004065.1 + 115311 0.69 0.71364
Target:  5'- cCGCCUauuccucucuccccuGUaGAGGGGCUgCUGCuGAGGCg -3'
miRNA:   3'- uGCGGG---------------UA-CUCCUCGAgGACG-CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 119333 0.66 0.872656
Target:  5'- uCGCCC-UGGGcAGCUCCa--GAGACa -3'
miRNA:   3'- uGCGGGuACUCcUCGAGGacgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 120539 1.09 0.002069
Target:  5'- gACGCCCAUGAGGAGCUCCUGCGAGACg -3'
miRNA:   3'- -UGCGGGUACUCCUCGAGGACGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 128368 0.74 0.433191
Target:  5'- uGCGCCCAUc-GGGGCUUCggcgGCGAGAg -3'
miRNA:   3'- -UGCGGGUAcuCCUCGAGGa---CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 132159 0.67 0.818706
Target:  5'- cGCGCCCAggUGAGG-GUggaaCUGCGGGu- -3'
miRNA:   3'- -UGCGGGU--ACUCCuCGag--GACGCUCug -5'
15798 3' -58.8 NC_004065.1 + 138700 0.73 0.495994
Target:  5'- aACGgCCucaAGGAGCUCCUcuaGCGGGGCa -3'
miRNA:   3'- -UGCgGGuacUCCUCGAGGA---CGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 142854 0.66 0.842909
Target:  5'- cCGCgCgGUGcAGGGGCUCCUG-GAcGACc -3'
miRNA:   3'- uGCG-GgUAC-UCCUCGAGGACgCU-CUG- -5'
15798 3' -58.8 NC_004065.1 + 155542 0.66 0.850628
Target:  5'- --cCCCGUGuGGuGCUUCUGCaAGACc -3'
miRNA:   3'- ugcGGGUACuCCuCGAGGACGcUCUG- -5'
15798 3' -58.8 NC_004065.1 + 169969 0.68 0.747781
Target:  5'- cGCGUCgCAUGAccaaGGAGUUCCU-CGAGAa -3'
miRNA:   3'- -UGCGG-GUACU----CCUCGAGGAcGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 173168 0.66 0.842909
Target:  5'- -gGCCCGUGGGaGGGCcgUCgUGCGAuuuucGGCa -3'
miRNA:   3'- ugCGGGUACUC-CUCG--AGgACGCU-----CUG- -5'
15798 3' -58.8 NC_004065.1 + 177153 0.66 0.858163
Target:  5'- uGCGCCUcgaucgGAGGAGCgUCCUGgccaGAGuCu -3'
miRNA:   3'- -UGCGGGua----CUCCUCG-AGGACg---CUCuG- -5'
15798 3' -58.8 NC_004065.1 + 179531 0.68 0.747781
Target:  5'- gACGCCCAacUGuGGGGa-CCUGCGGuGAUg -3'
miRNA:   3'- -UGCGGGU--ACuCCUCgaGGACGCU-CUG- -5'
15798 3' -58.8 NC_004065.1 + 184911 0.68 0.775312
Target:  5'- gGCGCCCggGUGgcucGGGAGCggCC-GgGAGACg -3'
miRNA:   3'- -UGCGGG--UAC----UCCUCGa-GGaCgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 187196 0.68 0.747781
Target:  5'- uCGCCCcgGAgGGGGUUCCcccgaUGUGAGGg -3'
miRNA:   3'- uGCGGGuaCU-CCUCGAGG-----ACGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 192953 0.68 0.757064
Target:  5'- uGCGCUCucGGGGGGUuucugcauUCUUGUGAGACg -3'
miRNA:   3'- -UGCGGGuaCUCCUCG--------AGGACGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 193955 0.67 0.793083
Target:  5'- aACGCCgcuccucuguuCGUGAGGAGUgucCCUaucgGCGAGAa -3'
miRNA:   3'- -UGCGG-----------GUACUCCUCGa--GGA----CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 197368 0.67 0.810314
Target:  5'- cGCGCCCGcGAGGAacucCUCCUGCa---- -3'
miRNA:   3'- -UGCGGGUaCUCCUc---GAGGACGcucug -5'
15798 3' -58.8 NC_004065.1 + 197651 0.67 0.813689
Target:  5'- gACGCUCAUGAuGGAGCuggauagguuauacgUCCccaaGCGGGAg -3'
miRNA:   3'- -UGCGGGUACU-CCUCG---------------AGGa---CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 201524 0.66 0.865507
Target:  5'- -aGuCCCAUGcgacGGAGCUCCgcgGCGcugucggccAGACg -3'
miRNA:   3'- ugC-GGGUACu---CCUCGAGGa--CGC---------UCUG- -5'
15798 3' -58.8 NC_004065.1 + 205861 0.7 0.64124
Target:  5'- aGCGCCUGUGAcGAGUUCUUcGUGGGAUa -3'
miRNA:   3'- -UGCGGGUACUcCUCGAGGA-CGCUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.