Results 41 - 42 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15798 | 3' | -58.8 | NC_004065.1 | + | 209961 | 0.66 | 0.858163 |
Target: 5'- -gGCCCGacGGGcGGCUCgaGCGAGAg -3' miRNA: 3'- ugCGGGUacUCC-UCGAGgaCGCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 210166 | 0.67 | 0.792207 |
Target: 5'- cACGUCCAUGAagaagauGGAGUacUCC-GCgGAGACg -3' miRNA: 3'- -UGCGGGUACU-------CCUCG--AGGaCG-CUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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