Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15798 | 3' | -58.8 | NC_004065.1 | + | 119333 | 0.66 | 0.872656 |
Target: 5'- uCGCCC-UGGGcAGCUCCa--GAGACa -3' miRNA: 3'- uGCGGGuACUCcUCGAGGacgCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 115311 | 0.69 | 0.71364 |
Target: 5'- cCGCCUauuccucucuccccuGUaGAGGGGCUgCUGCuGAGGCg -3' miRNA: 3'- uGCGGG---------------UA-CUCCUCGAgGACG-CUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 109629 | 0.66 | 0.850628 |
Target: 5'- gUGCCCAccaccgucGAGG-GCgUCCUGCGcGACu -3' miRNA: 3'- uGCGGGUa-------CUCCuCG-AGGACGCuCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 108667 | 0.7 | 0.640252 |
Target: 5'- gGCGCCCGUGcGGAuGgaCCUGCugugcgugcagagGAGACu -3' miRNA: 3'- -UGCGGGUACuCCU-CgaGGACG-------------CUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 91318 | 0.72 | 0.552903 |
Target: 5'- cUGCCCcgcGUaGAGGAGCUCCU-UGAGGCc -3' miRNA: 3'- uGCGGG---UA-CUCCUCGAGGAcGCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 88494 | 0.66 | 0.842909 |
Target: 5'- cGCGUCCucgGAGGuGCUCCUGaccuuGAG-Cu -3' miRNA: 3'- -UGCGGGua-CUCCuCGAGGACg----CUCuG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 75363 | 0.67 | 0.835011 |
Target: 5'- gUGCCCGaGAGGAGCagCUG-GAGGu -3' miRNA: 3'- uGCGGGUaCUCCUCGagGACgCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 70514 | 0.66 | 0.858163 |
Target: 5'- gGCGCCCuucucGAcGGAGCUgcaggcgcgCCUGC-AGGCg -3' miRNA: 3'- -UGCGGGua---CU-CCUCGA---------GGACGcUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 67007 | 0.67 | 0.818706 |
Target: 5'- gGCGCCCGUGuacGGGC-CCcGCGcGGGCa -3' miRNA: 3'- -UGCGGGUACuc-CUCGaGGaCGC-UCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 62704 | 0.67 | 0.818706 |
Target: 5'- cGCGgUCuUGGGGuAGCUCCUGCGGc-- -3' miRNA: 3'- -UGCgGGuACUCC-UCGAGGACGCUcug -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 53918 | 0.68 | 0.744977 |
Target: 5'- aGCGCCCGUcAGGAuaccgcuugcggcgGCUUCU-CGAGGCa -3' miRNA: 3'- -UGCGGGUAcUCCU--------------CGAGGAcGCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 53042 | 0.71 | 0.582106 |
Target: 5'- aGCGCCC-UGAGGAGCgucgCUggucGgGGGACu -3' miRNA: 3'- -UGCGGGuACUCCUCGa---GGa---CgCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 47311 | 0.7 | 0.67081 |
Target: 5'- uCGCCCGUGAGGccgaUCCgcgGCGGGGg -3' miRNA: 3'- uGCGGGUACUCCucg-AGGa--CGCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 33668 | 0.66 | 0.865507 |
Target: 5'- gGCGCgCGggGAGG-GC-CgCUGCGAGAUg -3' miRNA: 3'- -UGCGgGUa-CUCCuCGaG-GACGCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 32654 | 0.67 | 0.826941 |
Target: 5'- gUGUgCAgGAGGAGUUCCUcGCGGGcGCg -3' miRNA: 3'- uGCGgGUaCUCCUCGAGGA-CGCUC-UG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 29726 | 0.66 | 0.846018 |
Target: 5'- cCGCCCAggacgaUGAGauccuccggacagcaGAGguaCUCCUGCGAGAg -3' miRNA: 3'- uGCGGGU------ACUC---------------CUC---GAGGACGCUCUg -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 25658 | 0.66 | 0.850628 |
Target: 5'- aAC-CCgAUGAcGGAgaacuGCUCCgGCGAGGCg -3' miRNA: 3'- -UGcGGgUACU-CCU-----CGAGGaCGCUCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 14978 | 0.67 | 0.835011 |
Target: 5'- cACGUaccugcagaCCGUGAgGGAGCUCgUGgGuGACg -3' miRNA: 3'- -UGCG---------GGUACU-CCUCGAGgACgCuCUG- -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 7297 | 0.68 | 0.766244 |
Target: 5'- -gGuCCCGggcGAGGAGCUCCUGaCGAu-- -3' miRNA: 3'- ugC-GGGUa--CUCCUCGAGGAC-GCUcug -5' |
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15798 | 3' | -58.8 | NC_004065.1 | + | 4667 | 0.66 | 0.842909 |
Target: 5'- gGCGUCCAgagacaGAGGA-CUCCgGCGgcGGACa -3' miRNA: 3'- -UGCGGGUa-----CUCCUcGAGGaCGC--UCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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