miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15798 3' -58.8 NC_004065.1 + 119333 0.66 0.872656
Target:  5'- uCGCCC-UGGGcAGCUCCa--GAGACa -3'
miRNA:   3'- uGCGGGuACUCcUCGAGGacgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 142854 0.66 0.842909
Target:  5'- cCGCgCgGUGcAGGGGCUCCUG-GAcGACc -3'
miRNA:   3'- uGCG-GgUAC-UCCUCGAGGACgCU-CUG- -5'
15798 3' -58.8 NC_004065.1 + 29726 0.66 0.846018
Target:  5'- cCGCCCAggacgaUGAGauccuccggacagcaGAGguaCUCCUGCGAGAg -3'
miRNA:   3'- uGCGGGU------ACUC---------------CUC---GAGGACGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 109629 0.66 0.850628
Target:  5'- gUGCCCAccaccgucGAGG-GCgUCCUGCGcGACu -3'
miRNA:   3'- uGCGGGUa-------CUCCuCG-AGGACGCuCUG- -5'
15798 3' -58.8 NC_004065.1 + 25658 0.66 0.850628
Target:  5'- aAC-CCgAUGAcGGAgaacuGCUCCgGCGAGGCg -3'
miRNA:   3'- -UGcGGgUACU-CCU-----CGAGGaCGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 70514 0.66 0.858163
Target:  5'- gGCGCCCuucucGAcGGAGCUgcaggcgcgCCUGC-AGGCg -3'
miRNA:   3'- -UGCGGGua---CU-CCUCGA---------GGACGcUCUG- -5'
15798 3' -58.8 NC_004065.1 + 177153 0.66 0.858163
Target:  5'- uGCGCCUcgaucgGAGGAGCgUCCUGgccaGAGuCu -3'
miRNA:   3'- -UGCGGGua----CUCCUCG-AGGACg---CUCuG- -5'
15798 3' -58.8 NC_004065.1 + 209961 0.66 0.858163
Target:  5'- -gGCCCGacGGGcGGCUCgaGCGAGAg -3'
miRNA:   3'- ugCGGGUacUCC-UCGAGgaCGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 201524 0.66 0.865507
Target:  5'- -aGuCCCAUGcgacGGAGCUCCgcgGCGcugucggccAGACg -3'
miRNA:   3'- ugC-GGGUACu---CCUCGAGGa--CGC---------UCUG- -5'
15798 3' -58.8 NC_004065.1 + 75363 0.67 0.835011
Target:  5'- gUGCCCGaGAGGAGCagCUG-GAGGu -3'
miRNA:   3'- uGCGGGUaCUCCUCGagGACgCUCUg -5'
15798 3' -58.8 NC_004065.1 + 32654 0.67 0.826941
Target:  5'- gUGUgCAgGAGGAGUUCCUcGCGGGcGCg -3'
miRNA:   3'- uGCGgGUaCUCCUCGAGGA-CGCUC-UG- -5'
15798 3' -58.8 NC_004065.1 + 62704 0.67 0.818706
Target:  5'- cGCGgUCuUGGGGuAGCUCCUGCGGc-- -3'
miRNA:   3'- -UGCgGGuACUCC-UCGAGGACGCUcug -5'
15798 3' -58.8 NC_004065.1 + 91318 0.72 0.552903
Target:  5'- cUGCCCcgcGUaGAGGAGCUCCU-UGAGGCc -3'
miRNA:   3'- uGCGGG---UA-CUCCUCGAGGAcGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 47311 0.7 0.67081
Target:  5'- uCGCCCGUGAGGccgaUCCgcgGCGGGGg -3'
miRNA:   3'- uGCGGGUACUCCucg-AGGa--CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 187196 0.68 0.747781
Target:  5'- uCGCCCcgGAgGGGGUUCCcccgaUGUGAGGg -3'
miRNA:   3'- uGCGGGuaCU-CCUCGAGG-----ACGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 184911 0.68 0.775312
Target:  5'- gGCGCCCggGUGgcucGGGAGCggCC-GgGAGACg -3'
miRNA:   3'- -UGCGGG--UAC----UCCUCGa-GGaCgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 210166 0.67 0.792207
Target:  5'- cACGUCCAUGAagaagauGGAGUacUCC-GCgGAGACg -3'
miRNA:   3'- -UGCGGGUACU-------CCUCG--AGGaCG-CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 67007 0.67 0.818706
Target:  5'- gGCGCCCGUGuacGGGC-CCcGCGcGGGCa -3'
miRNA:   3'- -UGCGGGUACuc-CUCGaGGaCGC-UCUG- -5'
15798 3' -58.8 NC_004065.1 + 132159 0.67 0.818706
Target:  5'- cGCGCCCAggUGAGG-GUggaaCUGCGGGu- -3'
miRNA:   3'- -UGCGGGU--ACUCCuCGag--GACGCUCug -5'
15798 3' -58.8 NC_004065.1 + 92 0.67 0.818706
Target:  5'- gAUGgUCGUGAGGGuGCUCCUGaGAGuGCg -3'
miRNA:   3'- -UGCgGGUACUCCU-CGAGGACgCUC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.