miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15798 3' -58.8 NC_004065.1 + 92 0.67 0.818706
Target:  5'- gAUGgUCGUGAGGGuGCUCCUGaGAGuGCg -3'
miRNA:   3'- -UGCgGGUACUCCU-CGAGGACgCUC-UG- -5'
15798 3' -58.8 NC_004065.1 + 193955 0.67 0.793083
Target:  5'- aACGCCgcuccucuguuCGUGAGGAGUgucCCUaucgGCGAGAa -3'
miRNA:   3'- -UGCGG-----------GUACUCCUCGa--GGA----CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 197368 0.67 0.810314
Target:  5'- cGCGCCCGcGAGGAacucCUCCUGCa---- -3'
miRNA:   3'- -UGCGGGUaCUCCUc---GAGGACGcucug -5'
15798 3' -58.8 NC_004065.1 + 197651 0.67 0.813689
Target:  5'- gACGCUCAUGAuGGAGCuggauagguuauacgUCCccaaGCGGGAg -3'
miRNA:   3'- -UGCGGGUACU-CCUCG---------------AGGa---CGCUCUg -5'
15798 3' -58.8 NC_004065.1 + 14978 0.67 0.835011
Target:  5'- cACGUaccugcagaCCGUGAgGGAGCUCgUGgGuGACg -3'
miRNA:   3'- -UGCG---------GGUACU-CCUCGAGgACgCuCUG- -5'
15798 3' -58.8 NC_004065.1 + 173168 0.66 0.842909
Target:  5'- -gGCCCGUGGGaGGGCcgUCgUGCGAuuuucGGCa -3'
miRNA:   3'- ugCGGGUACUC-CUCG--AGgACGCU-----CUG- -5'
15798 3' -58.8 NC_004065.1 + 4667 0.66 0.842909
Target:  5'- gGCGUCCAgagacaGAGGA-CUCCgGCGgcGGACa -3'
miRNA:   3'- -UGCGGGUa-----CUCCUcGAGGaCGC--UCUG- -5'
15798 3' -58.8 NC_004065.1 + 88494 0.66 0.842909
Target:  5'- cGCGUCCucgGAGGuGCUCCUGaccuuGAG-Cu -3'
miRNA:   3'- -UGCGGGua-CUCCuCGAGGACg----CUCuG- -5'
15798 3' -58.8 NC_004065.1 + 3505 0.66 0.850628
Target:  5'- cUGCUCAgagacgGAGGGGCcuucgCCUGgGAGAg -3'
miRNA:   3'- uGCGGGUa-----CUCCUCGa----GGACgCUCUg -5'
15798 3' -58.8 NC_004065.1 + 7297 0.68 0.766244
Target:  5'- -gGuCCCGggcGAGGAGCUCCUGaCGAu-- -3'
miRNA:   3'- ugC-GGGUa--CUCCUCGAGGAC-GCUcug -5'
15798 3' -58.8 NC_004065.1 + 192953 0.68 0.757064
Target:  5'- uGCGCUCucGGGGGGUuucugcauUCUUGUGAGACg -3'
miRNA:   3'- -UGCGGGuaCUCCUCG--------AGGACGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 179531 0.68 0.747781
Target:  5'- gACGCCCAacUGuGGGGa-CCUGCGGuGAUg -3'
miRNA:   3'- -UGCGGGU--ACuCCUCgaGGACGCU-CUG- -5'
15798 3' -58.8 NC_004065.1 + 33668 0.66 0.865507
Target:  5'- gGCGCgCGggGAGG-GC-CgCUGCGAGAUg -3'
miRNA:   3'- -UGCGgGUa-CUCCuCGaG-GACGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 138700 0.73 0.495994
Target:  5'- aACGgCCucaAGGAGCUCCUcuaGCGGGGCa -3'
miRNA:   3'- -UGCgGGuacUCCUCGAGGA---CGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 53042 0.71 0.582106
Target:  5'- aGCGCCC-UGAGGAGCgucgCUggucGgGGGACu -3'
miRNA:   3'- -UGCGGGuACUCCUCGa---GGa---CgCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 108667 0.7 0.640252
Target:  5'- gGCGCCCGUGcGGAuGgaCCUGCugugcgugcagagGAGACu -3'
miRNA:   3'- -UGCGGGUACuCCU-CgaGGACG-------------CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 205861 0.7 0.64124
Target:  5'- aGCGCCUGUGAcGAGUUCUUcGUGGGAUa -3'
miRNA:   3'- -UGCGGGUACUcCUCGAGGA-CGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 115311 0.69 0.71364
Target:  5'- cCGCCUauuccucucuccccuGUaGAGGGGCUgCUGCuGAGGCg -3'
miRNA:   3'- uGCGGG---------------UA-CUCCUCGAgGACG-CUCUG- -5'
15798 3' -58.8 NC_004065.1 + 53918 0.68 0.744977
Target:  5'- aGCGCCCGUcAGGAuaccgcuugcggcgGCUUCU-CGAGGCa -3'
miRNA:   3'- -UGCGGGUAcUCCU--------------CGAGGAcGCUCUG- -5'
15798 3' -58.8 NC_004065.1 + 169969 0.68 0.747781
Target:  5'- cGCGUCgCAUGAccaaGGAGUUCCU-CGAGAa -3'
miRNA:   3'- -UGCGG-GUACU----CCUCGAGGAcGCUCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.